miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 100692 0.66 0.927676
Target:  5'- gGCCGAUagauGCCCGCGUAGCUcuGCu -3'
miRNA:   3'- aUGGUUGgguuUGGGUGCGUCGGu-UG- -5'
17284 5' -54.4 NC_004367.1 + 96852 0.66 0.932996
Target:  5'- uUACCuacaGGCUgAAGCUCugGCAGCUgagGACa -3'
miRNA:   3'- -AUGG----UUGGgUUUGGGugCGUCGG---UUG- -5'
17284 5' -54.4 NC_004367.1 + 39213 0.66 0.916276
Target:  5'- cGCCAAUCU---CCCACGCGuGCCucuAACa -3'
miRNA:   3'- aUGGUUGGGuuuGGGUGCGU-CGG---UUG- -5'
17284 5' -54.4 NC_004367.1 + 41919 0.66 0.932996
Target:  5'- gGCgGugCCGGGCCUACaCAGCCccuGCc -3'
miRNA:   3'- aUGgUugGGUUUGGGUGcGUCGGu--UG- -5'
17284 5' -54.4 NC_004367.1 + 106080 0.66 0.916276
Target:  5'- aGCCc-CCCGAACU---GCAGCCGGCa -3'
miRNA:   3'- aUGGuuGGGUUUGGgugCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 127789 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 124880 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 121971 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 38443 0.66 0.910197
Target:  5'- aGCgGAUaCCAGAcuCCCGCGCGuccuuGCCGACa -3'
miRNA:   3'- aUGgUUG-GGUUU--GGGUGCGU-----CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 92701 0.66 0.922103
Target:  5'- aUGCCAAC---GGCCgGCGUAGCuCAACu -3'
miRNA:   3'- -AUGGUUGgguUUGGgUGCGUCG-GUUG- -5'
17284 5' -54.4 NC_004367.1 + 121430 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 39533 0.67 0.876098
Target:  5'- cACCAGCCCAuACCCucaACGCccUUAACa -3'
miRNA:   3'- aUGGUUGGGUuUGGG---UGCGucGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 123919 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 121010 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 126828 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133596 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133508 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133204 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 130157 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.