miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 81616 1.08 0.00391
Target:  5'- cUACCAACCCAAACCCACGCAGCCAACu -3'
miRNA:   3'- -AUGGUUGGGUUUGGGUGCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 123097 0.74 0.514671
Target:  5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3'
miRNA:   3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 120188 0.74 0.514671
Target:  5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3'
miRNA:   3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 128915 0.74 0.514671
Target:  5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3'
miRNA:   3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 126006 0.74 0.514671
Target:  5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3'
miRNA:   3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 135488 0.74 0.524768
Target:  5'- cACCcACCCAGAUCCuCGCuGCCGAg -3'
miRNA:   3'- aUGGuUGGGUUUGGGuGCGuCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 26182 0.73 0.576254
Target:  5'- aGCCAACCCGGACCUuacaAUGUccAGCCAu- -3'
miRNA:   3'- aUGGUUGGGUUUGGG----UGCG--UCGGUug -5'
17284 5' -54.4 NC_004367.1 + 108996 0.71 0.681362
Target:  5'- uUGCCAACCagugggugGAGCgCGCGCagacAGCCAACg -3'
miRNA:   3'- -AUGGUUGGg-------UUUGgGUGCG----UCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 69571 0.71 0.712469
Target:  5'- cGCC-GCgCAuuGGCCCuuGCGGCCAACg -3'
miRNA:   3'- aUGGuUGgGU--UUGGGugCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 72352 0.7 0.73286
Target:  5'- aACCcACCCAGACCgG-GCAGCCu-- -3'
miRNA:   3'- aUGGuUGGGUUUGGgUgCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 74889 0.7 0.73286
Target:  5'- cAgCAGCCUAuauCCCAgcCGCAGCCAGa -3'
miRNA:   3'- aUgGUUGGGUuu-GGGU--GCGUCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 137518 0.7 0.73286
Target:  5'- aUACCAACCCAAGCaaauugCC-CGCGGCUc-- -3'
miRNA:   3'- -AUGGUUGGGUUUG------GGuGCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 104670 0.7 0.742921
Target:  5'- gGCCGACCCuccACCCuACGCAcaCAGCa -3'
miRNA:   3'- aUGGUUGGGuu-UGGG-UGCGUcgGUUG- -5'
17284 5' -54.4 NC_004367.1 + 27297 0.7 0.746918
Target:  5'- cUACCAGCCCuguCUUugGCuucccuacaucccgaGGCCAGCa -3'
miRNA:   3'- -AUGGUUGGGuuuGGGugCG---------------UCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 7898 0.7 0.75288
Target:  5'- -uCCAcUCCAcGCCCGCGgCGGCCAGu -3'
miRNA:   3'- auGGUuGGGUuUGGGUGC-GUCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 135953 0.7 0.772448
Target:  5'- gACCGugCCGccCCCuCGCAggGCCGGCg -3'
miRNA:   3'- aUGGUugGGUuuGGGuGCGU--CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 41810 0.69 0.782038
Target:  5'- gACCAuucgcGCCCAGACCCGgccuaugaguucCGCAGCa--- -3'
miRNA:   3'- aUGGU-----UGGGUUUGGGU------------GCGUCGguug -5'
17284 5' -54.4 NC_004367.1 + 55484 0.69 0.782038
Target:  5'- -uCCcACCCgAAACCC-CGCAGCCu-- -3'
miRNA:   3'- auGGuUGGG-UUUGGGuGCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 19732 0.69 0.818872
Target:  5'- -uUCAACUCAgcGACCUACGgCAGCCGu- -3'
miRNA:   3'- auGGUUGGGU--UUGGGUGC-GUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 92956 0.68 0.84464
Target:  5'- cACCGACCCuucauCCCGCGC-GUUAAa -3'
miRNA:   3'- aUGGUUGGGuuu--GGGUGCGuCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.