Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17287 | 3' | -52.6 | NC_004367.1 | + | 128423 | 0.66 | 0.972198 |
Target: 5'- cGAGcCCGagGCUUGCCAGA---GCGCUc -3' miRNA: 3'- -CUC-GGCg-UGGACGGUCUuuuUGUGAc -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 142501 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 142828 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 143156 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 143484 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 143811 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 144139 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 144467 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 144794 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 142173 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 141845 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 141518 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 50642 | 0.66 | 0.972198 |
Target: 5'- cGAGCgGUugCUcgaaaauccagGCCAGccugaccaAGAGACACUGa -3' miRNA: 3'- -CUCGgCGugGA-----------CGGUC--------UUUUUGUGAC- -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 121277 | 0.66 | 0.969204 |
Target: 5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3' miRNA: 3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 124186 | 0.66 | 0.969204 |
Target: 5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3' miRNA: 3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 127095 | 0.66 | 0.969204 |
Target: 5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3' miRNA: 3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 130004 | 0.66 | 0.969204 |
Target: 5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3' miRNA: 3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 50667 | 0.66 | 0.969204 |
Target: 5'- uGGUCGCagACCUGUCGGu--AACACUc -3' miRNA: 3'- cUCGGCG--UGGACGGUCuuuUUGUGAc -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 140862 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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17287 | 3' | -52.6 | NC_004367.1 | + | 141190 | 0.66 | 0.965987 |
Target: 5'- --cCCGCGCCgGCCAGAAAAAa---- -3' miRNA: 3'- cucGGCGUGGaCGGUCUUUUUgugac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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