miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17287 3' -52.6 NC_004367.1 + 9347 0.66 0.965987
Target:  5'- uGGCCGCGUCUGaCCA-AAuAACGCUGg -3'
miRNA:   3'- cUCGGCGUGGAC-GGUcUUuUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 10313 0.67 0.946343
Target:  5'- -cGCCGUaACCaaUGCCcauGAAGAGCGCUa -3'
miRNA:   3'- cuCGGCG-UGG--ACGGu--CUUUUUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 13393 0.66 0.972198
Target:  5'- cAGCCGUACUUGUCcuuGAGAcucGugGCUGc -3'
miRNA:   3'- cUCGGCGUGGACGGu--CUUU---UugUGAC- -5'
17287 3' -52.6 NC_004367.1 + 14005 0.69 0.901076
Target:  5'- --uUCGCGCCggGCCGGAGGAGCggaaaagGCUGg -3'
miRNA:   3'- cucGGCGUGGa-CGGUCUUUUUG-------UGAC- -5'
17287 3' -52.6 NC_004367.1 + 31102 0.68 0.926106
Target:  5'- aGGGCCGUgagacgccACCcGCCAGAcauacGGAACGCg- -3'
miRNA:   3'- -CUCGGCG--------UGGaCGGUCU-----UUUUGUGac -5'
17287 3' -52.6 NC_004367.1 + 43174 0.66 0.972198
Target:  5'- uAGUgGCuACCUGCUGGuu--GCACUGa -3'
miRNA:   3'- cUCGgCG-UGGACGGUCuuuuUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 48664 0.68 0.926106
Target:  5'- cGAGCCGuCACUUGCgaagugaauaAGAucuGCACUGg -3'
miRNA:   3'- -CUCGGC-GUGGACGg---------UCUuuuUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 50642 0.66 0.972198
Target:  5'- cGAGCgGUugCUcgaaaauccagGCCAGccugaccaAGAGACACUGa -3'
miRNA:   3'- -CUCGgCGugGA-----------CGGUC--------UUUUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 50667 0.66 0.969204
Target:  5'- uGGUCGCagACCUGUCGGu--AACACUc -3'
miRNA:   3'- cUCGGCG--UGGACGGUCuuuUUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 60926 0.68 0.926106
Target:  5'- gGAGCUGUcgccaauCCUGCCuucGGAAAACGCa- -3'
miRNA:   3'- -CUCGGCGu------GGACGGu--CUUUUUGUGac -5'
17287 3' -52.6 NC_004367.1 + 86719 1.09 0.004984
Target:  5'- uGAGCCGCACCUGCCAGAAAAACACUGa -3'
miRNA:   3'- -CUCGGCGUGGACGGUCUUUUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 90488 0.72 0.727446
Target:  5'- gGAGCCGCuCCUGUCcgcauAACACUGa -3'
miRNA:   3'- -CUCGGCGuGGACGGucuuuUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 100483 0.66 0.958857
Target:  5'- -cGCCGCugCUcuaUCAGAAAAcGCGCUGc -3'
miRNA:   3'- cuCGGCGugGAc--GGUCUUUU-UGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 120884 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 121277 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 121422 0.76 0.507138
Target:  5'- aGGCCGCGCCUGCCAGcc---CACa- -3'
miRNA:   3'- cUCGGCGUGGACGGUCuuuuuGUGac -5'
17287 3' -52.6 NC_004367.1 + 122605 0.66 0.972198
Target:  5'- cGAGcCCGagGCUUGCCAGA---GCGCUc -3'
miRNA:   3'- -CUC-GGCg-UGGACGGUCUuuuUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 123793 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 124186 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 124331 0.76 0.507138
Target:  5'- aGGCCGCGCCUGCCAGcc---CACa- -3'
miRNA:   3'- cUCGGCGUGGACGGUCuuuuuGUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.