miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17289 3' -48.9 NC_004367.1 + 149467 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 149381 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 149139 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 149053 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 148811 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148725 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 148484 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148398 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 148156 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148070 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 147828 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147742 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 147501 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147415 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 147173 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147087 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 146845 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146759 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 146518 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146432 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.