miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17294 5' -58.2 NC_004367.1 + 116616 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17294 5' -58.2 NC_004367.1 + 117179 0.68 0.708198
Target:  5'- gUCCCCaUGAG-CCguCCAGGAaaggCACCa -3'
miRNA:   3'- -AGGGGgAUUCuGGguGGUCCUg---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 120684 1.11 0.001414
Target:  5'- gUCCCCCUAAGACCCACCAGGACCACCc -3'
miRNA:   3'- -AGGGGGAUUCUGGGUGGUCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 120848 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 121109 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17294 5' -58.2 NC_004367.1 + 121200 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 121313 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 121617 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 121717 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 121816 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 121916 0.67 0.756292
Target:  5'- gUCCCCUuAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 122764 0.68 0.717975
Target:  5'- -gCCUC--GGGCUCGCCGGGACUuacaGCCg -3'
miRNA:   3'- agGGGGauUCUGGGUGGUCCUGG----UGG- -5'
17294 5' -58.2 NC_004367.1 + 123593 1.11 0.001414
Target:  5'- gUCCCCCUAAGACCCACCAGGACCACCc -3'
miRNA:   3'- -AGGGGGAUUCUGGGUGGUCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 123757 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 124018 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17294 5' -58.2 NC_004367.1 + 124109 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 124222 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 124526 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 124626 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 124726 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.