miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17294 5' -58.2 NC_004367.1 + 488 0.68 0.698358
Target:  5'- cUCCCCggcgGAGACUgAgU-GGACCACCg -3'
miRNA:   3'- aGGGGGa---UUCUGGgUgGuCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 7595 0.69 0.667553
Target:  5'- cUCCCCCcaucugcuuuuUAAGGCCCAagcuuuguCCAGGAaguagguuccuguCUACCc -3'
miRNA:   3'- -AGGGGG-----------AUUCUGGGU--------GGUCCU-------------GGUGG- -5'
17294 5' -58.2 NC_004367.1 + 9983 0.67 0.774851
Target:  5'- gCCCCUUAAGcCCCGCCucgucuACaCGCCg -3'
miRNA:   3'- aGGGGGAUUCuGGGUGGucc---UG-GUGG- -5'
17294 5' -58.2 NC_004367.1 + 11200 0.66 0.843523
Target:  5'- aCCCCCU--GACaCCGCCAacucccCCACCc -3'
miRNA:   3'- aGGGGGAuuCUG-GGUGGUccu---GGUGG- -5'
17294 5' -58.2 NC_004367.1 + 17072 0.66 0.827318
Target:  5'- cCUUUCUAGGAgCCugCAGGAUUGCa -3'
miRNA:   3'- aGGGGGAUUCUgGGugGUCCUGGUGg -5'
17294 5' -58.2 NC_004367.1 + 23058 0.72 0.472568
Target:  5'- uUCCCCCgauauaccuaUAGGuuccACCCACCGGGuuaaaccCCGCCc -3'
miRNA:   3'- -AGGGGG----------AUUC----UGGGUGGUCCu------GGUGG- -5'
17294 5' -58.2 NC_004367.1 + 23559 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17294 5' -58.2 NC_004367.1 + 26620 0.7 0.61841
Target:  5'- -aCCCCaGGGuuCCCACCccAGGGCUACUa -3'
miRNA:   3'- agGGGGaUUCu-GGGUGG--UCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 29992 0.66 0.810431
Target:  5'- aCCCCggGGcGAUCCGCCGGGcggcucaaaugaGCCGCa -3'
miRNA:   3'- aGGGGgaUU-CUGGGUGGUCC------------UGGUGg -5'
17294 5' -58.2 NC_004367.1 + 39198 0.67 0.772097
Target:  5'- gCCCCaaaaucuuggaaucgGAGGuCUCGCCuAGGACCAUCa -3'
miRNA:   3'- aGGGGga-------------UUCU-GGGUGG-UCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 41439 0.68 0.73731
Target:  5'- gUUCCaCUAuGACCCccGCCAGGgucgcagccaucACCACCg -3'
miRNA:   3'- -AGGGgGAUuCUGGG--UGGUCC------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 56920 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17294 5' -58.2 NC_004367.1 + 62434 0.67 0.79292
Target:  5'- gUCUaCCUAAccUCCACCAagauGGGCCGCCa -3'
miRNA:   3'- -AGGgGGAUUcuGGGUGGU----CCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 63093 0.67 0.765629
Target:  5'- gCCCCacga-ACCCugUagagcAGGACCGCCa -3'
miRNA:   3'- aGGGGgauucUGGGugG-----UCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 63277 0.69 0.668552
Target:  5'- aUCCCCaCUGGGugUguauCCAGGGCCAgUg -3'
miRNA:   3'- -AGGGG-GAUUCugGgu--GGUCCUGGUgG- -5'
17294 5' -58.2 NC_004367.1 + 65755 0.68 0.746849
Target:  5'- aCCCCaCguaacgguguGGAUCCACCAcGGCCACg -3'
miRNA:   3'- aGGGG-Gau--------UCUGGGUGGUcCUGGUGg -5'
17294 5' -58.2 NC_004367.1 + 74320 0.73 0.454334
Target:  5'- aUCCCCCUAAGuucCCCACugccgCAGGAC-AUCa -3'
miRNA:   3'- -AGGGGGAUUCu--GGGUG-----GUCCUGgUGG- -5'
17294 5' -58.2 NC_004367.1 + 78611 0.68 0.715049
Target:  5'- aUCCCCC--AGAUuccggCCACCAaguaccugcacuuuGGACCACg -3'
miRNA:   3'- -AGGGGGauUCUG-----GGUGGU--------------CCUGGUGg -5'
17294 5' -58.2 NC_004367.1 + 104064 0.67 0.755352
Target:  5'- uUCCCCCUGcGACCCuuuaaauCCAGccuacguGACCuCUg -3'
miRNA:   3'- -AGGGGGAUuCUGGGu------GGUC-------CUGGuGG- -5'
17294 5' -58.2 NC_004367.1 + 116115 0.72 0.472568
Target:  5'- uUCCCCCgauauaccuaUAGGuuccACCCACCGGGuuaaaccCCGCCc -3'
miRNA:   3'- -AGGGGG----------AUUC----UGGGUGGUCCu------GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.