miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17295 3' -67.1 NC_004367.1 + 116731 0.66 0.447844
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCUCCn -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 116884 0.66 0.447844
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCUCCn -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 115786 0.66 0.409036
Target:  5'- uCAGGGcacacucauuccuccGCAUUCGGGGGucaaCCGGGggacacgUCCCCg -3'
miRNA:   3'- -GUCCC---------------CGUAGGCCCUC----GGCCC-------GGGGG- -5'
17295 3' -67.1 NC_004367.1 + 122760 0.66 0.398678
Target:  5'- --cGGGCucgCCGGGAcuuacaGCCGcgauGGCCCCa -3'
miRNA:   3'- gucCCCGua-GGCCCU------CGGC----CCGGGGg -5'
17295 3' -67.1 NC_004367.1 + 102548 0.66 0.398678
Target:  5'- cCAGGGGCAUaaUauGGAugcuCCGGaGCCUCCa -3'
miRNA:   3'- -GUCCCCGUA--GgcCCUc---GGCC-CGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 56275 0.67 0.383074
Target:  5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3'
miRNA:   3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 56066 0.67 0.383074
Target:  5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3'
miRNA:   3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 22704 0.67 0.383074
Target:  5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3'
miRNA:   3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 22495 0.67 0.383074
Target:  5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3'
miRNA:   3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 117118 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 117092 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 117066 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 117040 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 117014 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116988 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116962 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116936 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116910 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116808 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116757 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.