Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17295 | 3' | -67.1 | NC_004367.1 | + | 116884 | 0.66 | 0.447844 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCUCCn -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116731 | 0.66 | 0.447844 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCUCCn -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 115786 | 0.66 | 0.409036 |
Target: 5'- uCAGGGcacacucauuccuccGCAUUCGGGGGucaaCCGGGggacacgUCCCCg -3' miRNA: 3'- -GUCCC---------------CGUAGGCCCUC----GGCCC-------GGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 102548 | 0.66 | 0.398678 |
Target: 5'- cCAGGGGCAUaaUauGGAugcuCCGGaGCCUCCa -3' miRNA: 3'- -GUCCCCGUA--GgcCCUc---GGCC-CGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 122760 | 0.66 | 0.398678 |
Target: 5'- --cGGGCucgCCGGGAcuuacaGCCGcgauGGCCCCa -3' miRNA: 3'- gucCCCGua-GGCCCU------CGGC----CCGGGGg -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 22704 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 56275 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 56066 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 22495 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116680 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116757 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116808 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116910 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116936 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116962 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 116988 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 117014 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 117040 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 117066 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17295 | 3' | -67.1 | NC_004367.1 | + | 117092 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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