miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17297 3' -64.5 NC_004367.1 + 57078 0.75 0.129833
Target:  5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3'
miRNA:   3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 125086 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 127396 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 127995 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 130305 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 23617 0.74 0.166038
Target:  5'- -cGGCCgUGGGGCUcCAGGCCCGGc-- -3'
miRNA:   3'- cuUCGG-ACCCCGGaGUCCGGGCCcug -5'
17297 3' -64.5 NC_004367.1 + 23657 0.75 0.129833
Target:  5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3'
miRNA:   3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 56998 0.75 0.129833
Target:  5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3'
miRNA:   3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 57038 0.75 0.129833
Target:  5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3'
miRNA:   3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 124487 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 122177 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 121578 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17297 3' -64.5 NC_004367.1 + 42105 0.66 0.461553
Target:  5'- aGAAcGCCcggcaGGGGCUgugUAGGCCCGGcACc -3'
miRNA:   3'- -CUU-CGGa----CCCCGGa--GUCCGGGCCcUG- -5'
17297 3' -64.5 NC_004367.1 + 125685 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 128594 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 121285 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 124194 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 127103 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 130012 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 122775 0.71 0.260178
Target:  5'- --cGCuCUGGcaaGCCUCGGGCucgCCGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCG---GGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.