miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17299 3' -58.2 NC_004367.1 + 125886 1.08 0.001704
Target:  5'- aGCAACCCCACGGCCCACUGCCUUCAAg -3'
miRNA:   3'- -CGUUGGGGUGCCGGGUGACGGAAGUU- -5'
17299 3' -58.2 NC_004367.1 + 122977 1.08 0.001704
Target:  5'- aGCAACCCCACGGCCCACUGCCUUCAAg -3'
miRNA:   3'- -CGUUGGGGUGCCGGGUGACGGAAGUU- -5'
17299 3' -58.2 NC_004367.1 + 128795 1.08 0.001704
Target:  5'- aGCAACCCCACGGCCCACUGCCUUCAAg -3'
miRNA:   3'- -CGUUGGGGUGCCGGGUGACGGAAGUU- -5'
17299 3' -58.2 NC_004367.1 + 129830 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 129785 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 121058 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 121103 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 126921 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 126876 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 124012 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 123967 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 145069 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 144741 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 144414 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 144086 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 143758 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 142448 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 142120 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 141137 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5'
17299 3' -58.2 NC_004367.1 + 147691 0.69 0.634079
Target:  5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3'
miRNA:   3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.