miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17299 3' -58.2 NC_004367.1 + 23475 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 23495 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 23535 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56817 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56837 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56857 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56896 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56916 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56936 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56956 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56976 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 56996 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 57016 0.67 0.744825
Target:  5'- -gAGCCCCACGGCCgg--GCCUg--- -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 57036 0.68 0.67497
Target:  5'- -gAGCCCCACGGCCgg--GCCUaCAc -3'
miRNA:   3'- cgUUGGGGUGCCGGgugaCGGAaGUu -5'
17299 3' -58.2 NC_004367.1 + 121058 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 121103 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 122977 1.08 0.001704
Target:  5'- aGCAACCCCACGGCCCACUGCCUUCAAg -3'
miRNA:   3'- -CGUUGGGGUGCCGGGUGACGGAAGUU- -5'
17299 3' -58.2 NC_004367.1 + 123967 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 124012 0.72 0.437807
Target:  5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3'
miRNA:   3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5'
17299 3' -58.2 NC_004367.1 + 125886 1.08 0.001704
Target:  5'- aGCAACCCCACGGCCCACUGCCUUCAAg -3'
miRNA:   3'- -CGUUGGGGUGCCGGGUGACGGAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.