Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17303 | 3' | -64.5 | NC_004367.1 | + | 127699 | 0.66 | 0.516389 |
Target: 5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3' miRNA: 3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 121880 | 0.66 | 0.516389 |
Target: 5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3' miRNA: 3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 124789 | 0.66 | 0.516389 |
Target: 5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3' miRNA: 3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 124154 | 0.66 | 0.507055 |
Target: 5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3' miRNA: 3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 129972 | 0.66 | 0.507055 |
Target: 5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3' miRNA: 3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 127063 | 0.66 | 0.507055 |
Target: 5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3' miRNA: 3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 121245 | 0.66 | 0.507055 |
Target: 5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3' miRNA: 3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 25420 | 0.66 | 0.497794 |
Target: 5'- aGGGCgUGGuGGUUUC-GGCCUGGGGg -3' miRNA: 3'- cUUCGgACC-CCGGAGuCCGGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 121780 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 124690 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 127599 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116892 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116840 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116583 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116788 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 117100 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116944 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116711 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116996 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 117048 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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