miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17303 3' -64.5 NC_004367.1 + 127699 0.66 0.516389
Target:  5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3'
miRNA:   3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121880 0.66 0.516389
Target:  5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3'
miRNA:   3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 124789 0.66 0.516389
Target:  5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3'
miRNA:   3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 124154 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 129972 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 127063 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 121245 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 25420 0.66 0.497794
Target:  5'- aGGGCgUGGuGGUUUC-GGCCUGGGGg -3'
miRNA:   3'- cUUCGgACC-CCGGAGuCCGGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 121780 0.66 0.48861
Target:  5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3'
miRNA:   3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5'
17303 3' -64.5 NC_004367.1 + 124690 0.66 0.48861
Target:  5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3'
miRNA:   3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5'
17303 3' -64.5 NC_004367.1 + 127599 0.66 0.48861
Target:  5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3'
miRNA:   3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116892 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116840 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116583 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116788 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 117100 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116944 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116711 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116996 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 117048 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.