miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17303 3' -64.5 NC_004367.1 + 130505 0.85 0.026271
Target:  5'- aGAAGCCUaGGGUCUCAGGCCCaGGACc -3'
miRNA:   3'- -CUUCGGAcCCCGGAGUCCGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 130405 0.95 0.004694
Target:  5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 130305 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 130012 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 129972 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 129869 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17303 3' -64.5 NC_004367.1 + 129604 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 128594 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127995 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127699 0.66 0.516389
Target:  5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3'
miRNA:   3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127696 1.07 0.000557
Target:  5'- aGAAGCCUGGGGCCUCAGGCCCGGGACc -3'
miRNA:   3'- -CUUCGGACCCCGGAGUCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127599 0.66 0.48861
Target:  5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3'
miRNA:   3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5'
17303 3' -64.5 NC_004367.1 + 127596 0.85 0.026271
Target:  5'- aGAAGCCUaGGGUCUCAGGCCCaGGACc -3'
miRNA:   3'- -CUUCGGAcCCCGGAGUCCGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127496 0.95 0.004694
Target:  5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127396 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127103 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 127063 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 126960 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17303 3' -64.5 NC_004367.1 + 126695 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 125685 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.