miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17303 3' -64.5 NC_004367.1 + 116892 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116944 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 116996 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 117048 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 117100 0.66 0.479506
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5'
17303 3' -64.5 NC_004367.1 + 120876 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121142 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121245 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5'
17303 3' -64.5 NC_004367.1 + 121285 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121578 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121678 0.95 0.004694
Target:  5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121777 0.78 0.086773
Target:  5'- aGAAGCCUaGGGUCUCAGGCCCaGGcCc -3'
miRNA:   3'- -CUUCGGAcCCCGGAGUCCGGGcCCuG- -5'
17303 3' -64.5 NC_004367.1 + 121780 0.66 0.48861
Target:  5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3'
miRNA:   3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5'
17303 3' -64.5 NC_004367.1 + 121877 1.07 0.000557
Target:  5'- aGAAGCCUGGGGCCUCAGGCCCGGGACc -3'
miRNA:   3'- -CUUCGGACCCCGGAGUCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 121880 0.66 0.516389
Target:  5'- uGAAGCCgGGuuuggauguaGGUgUCuGGGUCUGGGACa -3'
miRNA:   3'- -CUUCGGaCC----------CCGgAG-UCCGGGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 122177 0.73 0.178553
Target:  5'- aGAAGCCUGGuGUCUCAGaCCCaGGACc -3'
miRNA:   3'- -CUUCGGACCcCGGAGUCcGGGcCCUG- -5'
17303 3' -64.5 NC_004367.1 + 122775 0.71 0.260178
Target:  5'- --cGCuCUGGcaaGCCUCGGGCucgCCGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCG---GGCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 123785 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17303 3' -64.5 NC_004367.1 + 124051 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17303 3' -64.5 NC_004367.1 + 124154 0.66 0.507055
Target:  5'- gGggGUCUGuGGGCUggcaggCGcGGCCUGGGcCc -3'
miRNA:   3'- -CuuCGGAC-CCCGGa-----GU-CCGGGCCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.