miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17303 5' -55.3 NC_004367.1 + 124453 1.04 0.004915
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUGg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 122241 1.02 0.007127
Target:  5'- -gAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- uaUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 122143 0.97 0.016292
Target:  5'- cAUAAgCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUgGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 122041 0.71 0.59719
Target:  5'- -aAACCCGGCUUCAcGCCUCUc---- -3'
miRNA:   3'- uaUUGGGCCGAAGUcCGGAGGugaau -5'
17303 5' -55.3 NC_004367.1 + 121942 0.81 0.189996
Target:  5'- -gGACCCaGGCUUCAGGCCUCUcCUUu -3'
miRNA:   3'- uaUUGGG-CCGAAGUCCGGAGGuGAAu -5'
17303 5' -55.3 NC_004367.1 + 121843 1.05 0.004511
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 121744 1.05 0.004511
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 121644 1.05 0.004511
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 121544 1.04 0.004915
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUGg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 72962 0.67 0.860807
Target:  5'- ---cCCCuGCUUCuGGCCUCCcCUa- -3'
miRNA:   3'- uauuGGGcCGAAGuCCGGAGGuGAau -5'
17303 5' -55.3 NC_004367.1 + 57203 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57183 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57163 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57143 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57123 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57103 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57083 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57063 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57043 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5'
17303 5' -55.3 NC_004367.1 + 57023 0.66 0.903867
Target:  5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3'
miRNA:   3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.