miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17306 3' -61.8 NC_004367.1 + 5908 0.66 0.650226
Target:  5'- uGCCAGGACCugaagAUCCUGucacauccGGGCCCgCCcAGc -3'
miRNA:   3'- -UGGUCCUGG-----UGGGAC--------CUCGGG-GGuUC- -5'
17306 3' -61.8 NC_004367.1 + 102546 0.66 0.650226
Target:  5'- aACCAGGGgCauaauauggauGCUCcGGAGCCUCCAu- -3'
miRNA:   3'- -UGGUCCUgG-----------UGGGaCCUCGGGGGUuc -5'
17306 3' -61.8 NC_004367.1 + 12883 0.66 0.630385
Target:  5'- aACacaGGGGCgGCUCUGGA-CCCCUAAu -3'
miRNA:   3'- -UGg--UCCUGgUGGGACCUcGGGGGUUc -5'
17306 3' -61.8 NC_004367.1 + 102747 0.66 0.630385
Target:  5'- uCCAGauccGCCACCCaUGGAGgCUCCGGa -3'
miRNA:   3'- uGGUCc---UGGUGGG-ACCUCgGGGGUUc -5'
17306 3' -61.8 NC_004367.1 + 124266 0.68 0.532318
Target:  5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3'
miRNA:   3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5'
17306 3' -61.8 NC_004367.1 + 130084 0.68 0.532318
Target:  5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3'
miRNA:   3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5'
17306 3' -61.8 NC_004367.1 + 127175 0.68 0.532318
Target:  5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3'
miRNA:   3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5'
17306 3' -61.8 NC_004367.1 + 121357 0.68 0.532318
Target:  5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3'
miRNA:   3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5'
17306 3' -61.8 NC_004367.1 + 96001 0.68 0.522762
Target:  5'- aGCCAuGGAau-CCCgGGAGCCCCuCAAu -3'
miRNA:   3'- -UGGU-CCUgguGGGaCCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 56831 0.68 0.512328
Target:  5'- gGCCuGGAgccCCACggccgggCCUGGAGCCCCa--- -3'
miRNA:   3'- -UGGuCCU---GGUG-------GGACCUCGGGGguuc -5'
17306 3' -61.8 NC_004367.1 + 80952 0.68 0.503855
Target:  5'- cGCUcGGACCGggaCCUGGuGCCUCCAc- -3'
miRNA:   3'- -UGGuCCUGGUg--GGACCuCGGGGGUuc -5'
17306 3' -61.8 NC_004367.1 + 68168 0.68 0.502917
Target:  5'- uCC-GGACCACgggugucuugaagCCUGG-GCCuCCCAAGg -3'
miRNA:   3'- uGGuCCUGGUG-------------GGACCuCGG-GGGUUC- -5'
17306 3' -61.8 NC_004367.1 + 96189 0.68 0.48525
Target:  5'- uCCAGGAUgcaCAUUgaGGGGCUCCCGGGa -3'
miRNA:   3'- uGGUCCUG---GUGGgaCCUCGGGGGUUC- -5'
17306 3' -61.8 NC_004367.1 + 23509 0.68 0.484329
Target:  5'- gGCCuGGAgucCCACggccgggCCUGGAGCCCCaCGGc -3'
miRNA:   3'- -UGGuCCU---GGUG-------GGACCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 23432 0.69 0.476071
Target:  5'- gGCCGcaguauGGGCCgGgCCUGGAGCCCCa--- -3'
miRNA:   3'- -UGGU------CCUGG-UgGGACCUCGGGGguuc -5'
17306 3' -61.8 NC_004367.1 + 56925 0.69 0.473334
Target:  5'- gGCCGGGccuggagccccacgGCCgGgCCUGGAGCCCCaCGGc -3'
miRNA:   3'- -UGGUCC--------------UGG-UgGGACCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 56985 0.69 0.473334
Target:  5'- gGCCGGGccuggagccccacgGCCgGgCCUGGAGCCCCaCGGc -3'
miRNA:   3'- -UGGUCC--------------UGG-UgGGACCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 56866 0.69 0.466075
Target:  5'- gGCCGGGccuggagccccacGCCgGgCCUGGAGCCCCaCGGc -3'
miRNA:   3'- -UGGUCC-------------UGG-UgGGACCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 56789 0.69 0.439383
Target:  5'- uUCuGGACCGCgguaugggccgggCCUGGAGCCCCaCGGc -3'
miRNA:   3'- uGGuCCUGGUG-------------GGACCUCGGGG-GUUc -5'
17306 3' -61.8 NC_004367.1 + 23464 0.73 0.270505
Target:  5'- gGCCGGGGCUggagccccacggccgGgCCUGGAGCCCCaCGGc -3'
miRNA:   3'- -UGGUCCUGG---------------UgGGACCUCGGGG-GUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.