Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 5908 | 0.66 | 0.650226 |
Target: 5'- uGCCAGGACCugaagAUCCUGucacauccGGGCCCgCCcAGc -3' miRNA: 3'- -UGGUCCUGG-----UGGGAC--------CUCGGG-GGuUC- -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 102546 | 0.66 | 0.650226 |
Target: 5'- aACCAGGGgCauaauauggauGCUCcGGAGCCUCCAu- -3' miRNA: 3'- -UGGUCCUgG-----------UGGGaCCUCGGGGGUuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 102747 | 0.66 | 0.630385 |
Target: 5'- uCCAGauccGCCACCCaUGGAGgCUCCGGa -3' miRNA: 3'- uGGUCc---UGGUGGG-ACCUCgGGGGUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 12883 | 0.66 | 0.630385 |
Target: 5'- aACacaGGGGCgGCUCUGGA-CCCCUAAu -3' miRNA: 3'- -UGg--UCCUGgUGGGACCUcGGGGGUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 121357 | 0.68 | 0.532318 |
Target: 5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3' miRNA: 3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 124266 | 0.68 | 0.532318 |
Target: 5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3' miRNA: 3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 127175 | 0.68 | 0.532318 |
Target: 5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3' miRNA: 3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 130084 | 0.68 | 0.532318 |
Target: 5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3' miRNA: 3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 96001 | 0.68 | 0.522762 |
Target: 5'- aGCCAuGGAau-CCCgGGAGCCCCuCAAu -3' miRNA: 3'- -UGGU-CCUgguGGGaCCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 56831 | 0.68 | 0.512328 |
Target: 5'- gGCCuGGAgccCCACggccgggCCUGGAGCCCCa--- -3' miRNA: 3'- -UGGuCCU---GGUG-------GGACCUCGGGGguuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 80952 | 0.68 | 0.503855 |
Target: 5'- cGCUcGGACCGggaCCUGGuGCCUCCAc- -3' miRNA: 3'- -UGGuCCUGGUg--GGACCuCGGGGGUuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 68168 | 0.68 | 0.502917 |
Target: 5'- uCC-GGACCACgggugucuugaagCCUGG-GCCuCCCAAGg -3' miRNA: 3'- uGGuCCUGGUG-------------GGACCuCGG-GGGUUC- -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 96189 | 0.68 | 0.48525 |
Target: 5'- uCCAGGAUgcaCAUUgaGGGGCUCCCGGGa -3' miRNA: 3'- uGGUCCUG---GUGGgaCCUCGGGGGUUC- -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 23509 | 0.68 | 0.484329 |
Target: 5'- gGCCuGGAgucCCACggccgggCCUGGAGCCCCaCGGc -3' miRNA: 3'- -UGGuCCU---GGUG-------GGACCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 23432 | 0.69 | 0.476071 |
Target: 5'- gGCCGcaguauGGGCCgGgCCUGGAGCCCCa--- -3' miRNA: 3'- -UGGU------CCUGG-UgGGACCUCGGGGguuc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 56925 | 0.69 | 0.473334 |
Target: 5'- gGCCGGGccuggagccccacgGCCgGgCCUGGAGCCCCaCGGc -3' miRNA: 3'- -UGGUCC--------------UGG-UgGGACCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 56985 | 0.69 | 0.473334 |
Target: 5'- gGCCGGGccuggagccccacgGCCgGgCCUGGAGCCCCaCGGc -3' miRNA: 3'- -UGGUCC--------------UGG-UgGGACCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 56866 | 0.69 | 0.466075 |
Target: 5'- gGCCGGGccuggagccccacGCCgGgCCUGGAGCCCCaCGGc -3' miRNA: 3'- -UGGUCC-------------UGG-UgGGACCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 56789 | 0.69 | 0.439383 |
Target: 5'- uUCuGGACCGCgguaugggccgggCCUGGAGCCCCaCGGc -3' miRNA: 3'- uGGuCCUGGUG-------------GGACCUCGGGG-GUUc -5' |
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17306 | 3' | -61.8 | NC_004367.1 | + | 23464 | 0.73 | 0.270505 |
Target: 5'- gGCCGGGGCUggagccccacggccgGgCCUGGAGCCCCaCGGc -3' miRNA: 3'- -UGGUCCUGG---------------UgGGACCUCGGGG-GUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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