Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17306 | 5' | -55.9 | NC_004367.1 | + | 43520 | 0.66 | 0.906272 |
Target: 5'- gGGCCgaagagccgAGUgUCCCCAgguuaacguauuuUGGACcCCCGa -3' miRNA: 3'- -CCGGa--------UCAgAGGGGU-------------AUCUGaGGGUa -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 119878 | 0.67 | 0.824916 |
Target: 5'- aGCCUAGUCUCUCCAgGGGua-CCAg -3' miRNA: 3'- cCGGAUCAGAGGGGUaUCUgagGGUa -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 23488 | 0.69 | 0.721672 |
Target: 5'- gGGCCUGGag-CCCCAcggccgggccUGGAgUCCCAc -3' miRNA: 3'- -CCGGAUCagaGGGGU----------AUCUgAGGGUa -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 69624 | 0.71 | 0.650225 |
Target: 5'- aGGCCUGGUaCUCCCCugAGAUguUCCUu- -3' miRNA: 3'- -CCGGAUCA-GAGGGGuaUCUG--AGGGua -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 123449 | 0.74 | 0.47865 |
Target: 5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3' miRNA: 3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 126358 | 0.74 | 0.47865 |
Target: 5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3' miRNA: 3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 129267 | 0.74 | 0.47865 |
Target: 5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3' miRNA: 3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 120540 | 0.74 | 0.47865 |
Target: 5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3' miRNA: 3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 129360 | 1.08 | 0.002943 |
Target: 5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3' miRNA: 3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 126451 | 1.08 | 0.002943 |
Target: 5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3' miRNA: 3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 120633 | 1.08 | 0.002943 |
Target: 5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3' miRNA: 3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5' |
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17306 | 5' | -55.9 | NC_004367.1 | + | 123542 | 1.08 | 0.002943 |
Target: 5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3' miRNA: 3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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