Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 3' | -45.7 | NC_004367.1 | + | 142982 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 142655 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 142327 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 141999 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 141672 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 141344 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 141016 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 140689 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133930 | 0.68 | 0.999774 |
Target: 5'- aACAAcUGUgaccaaaGCaCCAACAAACGUUGg -3' miRNA: 3'- -UGUUuACAac-----CGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133872 | 0.8 | 0.766133 |
Target: 5'- aGCAAAaacGUUGGCaCCAGCAAAUGUUGg -3' miRNA: 3'- -UGUUUa--CAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133810 | 0.73 | 0.984804 |
Target: 5'- -gGAAUGUUGcCaCCAACAAACGUUGc -3' miRNA: 3'- ugUUUACAACcGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133752 | 0.8 | 0.75579 |
Target: 5'- aACAAAcGUUGGCaCCAACAAACGUg- -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133713 | 0.95 | 0.169655 |
Target: 5'- aACAAAUGUUGGCaCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133648 | 0.81 | 0.734729 |
Target: 5'- aACAGAcGUUGGCaCUAACAAACGUUGc -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133608 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133579 | 0.83 | 0.64721 |
Target: 5'- aACGuuUGUUGGUGCCAACGuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133559 | 0.7 | 0.997976 |
Target: 5'- uCAAggGUccuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133539 | 0.84 | 0.56964 |
Target: 5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133520 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133474 | 0.66 | 0.999942 |
Target: 5'- aACGuuUGUUaGUGCCAACGucUGUUGg -3' miRNA: 3'- -UGUuuACAAcCGCGGUUGUuuGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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