Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 3' | -45.7 | NC_004367.1 | + | 133064 | 0.76 | 0.935545 |
Target: 5'- aACAAAUGgUGGUGCCcACAuuUGUUGg -3' miRNA: 3'- -UGUUUACaACCGCGGuUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133810 | 0.73 | 0.984804 |
Target: 5'- -gGAAUGUUGcCaCCAACAAACGUUGc -3' miRNA: 3'- ugUUUACAACcGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133471 | 0.72 | 0.988295 |
Target: 5'- uCAAggGUcGuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaCcGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 124054 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 121145 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 126963 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 129872 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 84652 | 0.71 | 0.993393 |
Target: 5'- aACAAA---UGGCGCCGuACAGgucACGUUGg -3' miRNA: 3'- -UGUUUacaACCGCGGU-UGUU---UGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133559 | 0.7 | 0.997976 |
Target: 5'- uCAAggGUccuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133335 | 0.7 | 0.997976 |
Target: 5'- uCAAggGUccuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133167 | 0.7 | 0.997976 |
Target: 5'- uCAAggGUccuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 7638 | 0.69 | 0.999088 |
Target: 5'- cCGAGUGUUGGCGUgG-CAAACa--- -3' miRNA: 3'- uGUUUACAACCGCGgUuGUUUGcaac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 107957 | 0.69 | 0.999265 |
Target: 5'- cACAAGUGcgGGCGCCcccCAGACa--- -3' miRNA: 3'- -UGUUUACaaCCGCGGuu-GUUUGcaac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 37551 | 0.68 | 0.999629 |
Target: 5'- aACAAGUGUauucgaucgcggUGGUGUgGGCAAAuUGUUGg -3' miRNA: 3'- -UGUUUACA------------ACCGCGgUUGUUU-GCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133930 | 0.68 | 0.999774 |
Target: 5'- aACAAcUGUgaccaaaGCaCCAACAAACGUUGg -3' miRNA: 3'- -UGUUuACAac-----CGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133383 | 0.68 | 0.999774 |
Target: 5'- uCAAGcGUccuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUUaCAaccGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 74021 | 0.67 | 0.999898 |
Target: 5'- gGCAauGAUGUuaUGGUGUCGGCA-GCGUg- -3' miRNA: 3'- -UGU--UUACA--ACCGCGGUUGUuUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 149536 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 144948 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 145276 | 0.67 | 0.999898 |
Target: 5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3' miRNA: 3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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