miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17315 3' -45.7 NC_004367.1 + 141672 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 141999 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 142327 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 142655 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 142982 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 143310 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 143638 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 143965 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144293 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144621 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 145276 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144948 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 133383 0.68 0.999774
Target:  5'- uCAAGcGUccuCGCCAACAAACGUUGc -3'
miRNA:   3'- uGUUUaCAaccGCGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133930 0.68 0.999774
Target:  5'- aACAAcUGUgaccaaaGCaCCAACAAACGUUGg -3'
miRNA:   3'- -UGUUuACAac-----CGcGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 37551 0.68 0.999629
Target:  5'- aACAAGUGUauucgaucgcggUGGUGUgGGCAAAuUGUUGg -3'
miRNA:   3'- -UGUUUACA------------ACCGCGgUUGUUU-GCAAC- -5'
17315 3' -45.7 NC_004367.1 + 107957 0.69 0.999265
Target:  5'- cACAAGUGcgGGCGCCcccCAGACa--- -3'
miRNA:   3'- -UGUUUACaaCCGCGGuu-GUUUGcaac -5'
17315 3' -45.7 NC_004367.1 + 7638 0.69 0.999088
Target:  5'- cCGAGUGUUGGCGUgG-CAAACa--- -3'
miRNA:   3'- uGUUUACAACCGCGgUuGUUUGcaac -5'
17315 3' -45.7 NC_004367.1 + 133559 0.7 0.997976
Target:  5'- uCAAggGUccuCGCCAACAAACGUUGc -3'
miRNA:   3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133335 0.7 0.997976
Target:  5'- uCAAggGUccuCGCCAACAAACGUUGc -3'
miRNA:   3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133167 0.7 0.997976
Target:  5'- uCAAggGUccuCGCCAACAAACGUUGc -3'
miRNA:   3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.