Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 3' | -45.7 | NC_004367.1 | + | 84652 | 0.71 | 0.993393 |
Target: 5'- aACAAA---UGGCGCCGuACAGgucACGUUGg -3' miRNA: 3'- -UGUUUacaACCGCGGU-UGUU---UGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 126963 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 121145 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 124054 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 129872 | 0.71 | 0.992327 |
Target: 5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3' miRNA: 3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133471 | 0.72 | 0.988295 |
Target: 5'- uCAAggGUcGuCGCCAACAAACGUUGc -3' miRNA: 3'- uGUUuaCAaCcGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133810 | 0.73 | 0.984804 |
Target: 5'- -gGAAUGUUGcCaCCAACAAACGUUGc -3' miRNA: 3'- ugUUUACAACcGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133064 | 0.76 | 0.935545 |
Target: 5'- aACAAAUGgUGGUGCCcACAuuUGUUGg -3' miRNA: 3'- -UGUUUACaACCGCGGuUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133872 | 0.8 | 0.766133 |
Target: 5'- aGCAAAaacGUUGGCaCCAGCAAAUGUUGg -3' miRNA: 3'- -UGUUUa--CAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133752 | 0.8 | 0.75579 |
Target: 5'- aACAAAcGUUGGCaCCAACAAACGUg- -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133648 | 0.81 | 0.734729 |
Target: 5'- aACAGAcGUUGGCaCUAACAAACGUUGc -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133579 | 0.83 | 0.64721 |
Target: 5'- aACGuuUGUUGGUGCCAACGuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133539 | 0.84 | 0.56964 |
Target: 5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 132954 | 0.84 | 0.56964 |
Target: 5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133434 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133082 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133346 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133258 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133122 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133042 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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