Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 3' | -45.7 | NC_004367.1 | + | 133296 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133432 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133256 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133520 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133216 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133608 | 1.09 | 0.028117 |
Target: 5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133713 | 0.95 | 0.169655 |
Target: 5'- aACAAAUGUUGGCaCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133128 | 0.95 | 0.169655 |
Target: 5'- aACAAAUGUUGGCaCCAACAAACGUUGc -3' miRNA: 3'- -UGUUUACAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133042 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133258 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133122 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133434 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133346 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133082 | 0.88 | 0.377912 |
Target: 5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 132954 | 0.84 | 0.56964 |
Target: 5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133539 | 0.84 | 0.56964 |
Target: 5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133579 | 0.83 | 0.64721 |
Target: 5'- aACGuuUGUUGGUGCCAACGuuUGUUGg -3' miRNA: 3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133648 | 0.81 | 0.734729 |
Target: 5'- aACAGAcGUUGGCaCUAACAAACGUUGc -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAAC- -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133752 | 0.8 | 0.75579 |
Target: 5'- aACAAAcGUUGGCaCCAACAAACGUg- -3' miRNA: 3'- -UGUUUaCAACCGcGGUUGUUUGCAac -5' |
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17315 | 3' | -45.7 | NC_004367.1 | + | 133872 | 0.8 | 0.766133 |
Target: 5'- aGCAAAaacGUUGGCaCCAGCAAAUGUUGg -3' miRNA: 3'- -UGUUUa--CAACCGcGGUUGUUUGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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