miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17315 3' -45.7 NC_004367.1 + 7638 0.69 0.999088
Target:  5'- cCGAGUGUUGGCGUgG-CAAACa--- -3'
miRNA:   3'- uGUUUACAACCGCGgUuGUUUGcaac -5'
17315 3' -45.7 NC_004367.1 + 31093 0.66 0.999942
Target:  5'- gACAAAUGgaGG-GCCGugAGACGc-- -3'
miRNA:   3'- -UGUUUACaaCCgCGGUugUUUGCaac -5'
17315 3' -45.7 NC_004367.1 + 37551 0.68 0.999629
Target:  5'- aACAAGUGUauucgaucgcggUGGUGUgGGCAAAuUGUUGg -3'
miRNA:   3'- -UGUUUACA------------ACCGCGgUUGUUU-GCAAC- -5'
17315 3' -45.7 NC_004367.1 + 74021 0.67 0.999898
Target:  5'- gGCAauGAUGUuaUGGUGUCGGCA-GCGUg- -3'
miRNA:   3'- -UGU--UUACA--ACCGCGGUUGUuUGCAac -5'
17315 3' -45.7 NC_004367.1 + 84652 0.71 0.993393
Target:  5'- aACAAA---UGGCGCCGuACAGgucACGUUGg -3'
miRNA:   3'- -UGUUUacaACCGCGGU-UGUU---UGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 107957 0.69 0.999265
Target:  5'- cACAAGUGcgGGCGCCcccCAGACa--- -3'
miRNA:   3'- -UGUUUACaaCCGCGGuu-GUUUGcaac -5'
17315 3' -45.7 NC_004367.1 + 121145 0.71 0.992327
Target:  5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3'
miRNA:   3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5'
17315 3' -45.7 NC_004367.1 + 124054 0.71 0.992327
Target:  5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3'
miRNA:   3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5'
17315 3' -45.7 NC_004367.1 + 126963 0.71 0.992327
Target:  5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3'
miRNA:   3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5'
17315 3' -45.7 NC_004367.1 + 129872 0.71 0.992327
Target:  5'- cUAAGUGUcuUGGCaGCCAGCAAcCGUg- -3'
miRNA:   3'- uGUUUACA--ACCG-CGGUUGUUuGCAac -5'
17315 3' -45.7 NC_004367.1 + 132890 0.66 0.999977
Target:  5'- aACAAAUGUgGGCaCCAcCAuuUGUUGa -3'
miRNA:   3'- -UGUUUACAaCCGcGGUuGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 132954 0.84 0.56964
Target:  5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133042 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133064 0.76 0.935545
Target:  5'- aACAAAUGgUGGUGCCcACAuuUGUUGg -3'
miRNA:   3'- -UGUUUACaACCGCGGuUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133082 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133122 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133128 0.95 0.169655
Target:  5'- aACAAAUGUUGGCaCCAACAAACGUUGc -3'
miRNA:   3'- -UGUUUACAACCGcGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133167 0.7 0.997976
Target:  5'- uCAAggGUccuCGCCAACAAACGUUGc -3'
miRNA:   3'- uGUUuaCAaccGCGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133216 1.09 0.028117
Target:  5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3'
miRNA:   3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133256 1.09 0.028117
Target:  5'- aACAAAUGUUGGCGCCAACAAACGUUGc -3'
miRNA:   3'- -UGUUUACAACCGCGGUUGUUUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.