miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17315 3' -45.7 NC_004367.1 + 133042 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 31093 0.66 0.999942
Target:  5'- gACAAAUGgaGG-GCCGugAGACGc-- -3'
miRNA:   3'- -UGUUUACaaCCgCGGUugUUUGCaac -5'
17315 3' -45.7 NC_004367.1 + 133579 0.83 0.64721
Target:  5'- aACGuuUGUUGGUGCCAACGuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133539 0.84 0.56964
Target:  5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133434 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133346 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 132890 0.66 0.999977
Target:  5'- aACAAAUGUgGGCaCCAcCAuuUGUUGa -3'
miRNA:   3'- -UGUUUACAaCCGcGGUuGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 37551 0.68 0.999629
Target:  5'- aACAAGUGUauucgaucgcggUGGUGUgGGCAAAuUGUUGg -3'
miRNA:   3'- -UGUUUACA------------ACCGCGgUUGUUU-GCAAC- -5'
17315 3' -45.7 NC_004367.1 + 132954 0.84 0.56964
Target:  5'- aACGuuUGUUGGUGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133258 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133082 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 133122 0.88 0.377912
Target:  5'- aACGuuUGUUGGCGCCAACAuuUGUUGg -3'
miRNA:   3'- -UGUuuACAACCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 107957 0.69 0.999265
Target:  5'- cACAAGUGcgGGCGCCcccCAGACa--- -3'
miRNA:   3'- -UGUUUACaaCCGCGGuu-GUUUGcaac -5'
17315 3' -45.7 NC_004367.1 + 133474 0.66 0.999942
Target:  5'- aACGuuUGUUaGUGCCAACGucUGUUGg -3'
miRNA:   3'- -UGUuuACAAcCGCGGUUGUuuGCAAC- -5'
17315 3' -45.7 NC_004367.1 + 145276 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144948 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144621 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 144293 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 141344 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5'
17315 3' -45.7 NC_004367.1 + 142655 0.67 0.999898
Target:  5'- gGCGGGgcgGggGGCGCC--CGAGCGUg- -3'
miRNA:   3'- -UGUUUa--CaaCCGCGGuuGUUUGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.