Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 5' | -46.1 | NC_004367.1 | + | 135958 | 0.68 | 0.999549 |
Target: 5'- uGCCGcccccucGCAGGgcc-GGCGUCAACAAAUa -3' miRNA: 3'- -CGGU-------UGUUUacaaCCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 135469 | 0.67 | 0.999875 |
Target: 5'- uGCCGAguAgcaGUGUUGuGCuGCCcgggGACAAGCg -3' miRNA: 3'- -CGGUUguU---UACAAC-CG-CGG----UUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133933 | 0.66 | 0.999905 |
Target: 5'- aCCAACAAcUGUgaccaaaGCaCCAACAAACg -3' miRNA: 3'- cGGUUGUUuACAac-----CGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133857 | 0.8 | 0.759502 |
Target: 5'- aCCAGCAAAUGUUGGUcuCCAGCAAc- -3' miRNA: 3'- cGGUUGUUUACAACCGc-GGUUGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133816 | 0.78 | 0.84587 |
Target: 5'- gGCCAAgGAAUGUUGcCaCCAACAAACg -3' miRNA: 3'- -CGGUUgUUUACAACcGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133756 | 0.92 | 0.219154 |
Target: 5'- cGCCAACAAAcGUUGGCaCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133747 | 0.73 | 0.976353 |
Target: 5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3' miRNA: 3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133717 | 1.01 | 0.067243 |
Target: 5'- aGCCAACAAAUGUUGGCaCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133694 | 0.76 | 0.92026 |
Target: 5'- aCCAACAuuUGcUGGUGCCAACGu-- -3' miRNA: 3'- cGGUUGUuuACaACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133652 | 0.88 | 0.381609 |
Target: 5'- cGCCAACAGAcGUUGGCaCUAACAAACg -3' miRNA: 3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133635 | 0.68 | 0.998939 |
Target: 5'- gGgCAACGuuUGUUGGUGgCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCgGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133612 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133591 | 0.8 | 0.769781 |
Target: 5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133535 | 0.79 | 0.779914 |
Target: 5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133524 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133486 | 0.71 | 0.993681 |
Target: 5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133436 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133430 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133372 | 0.66 | 0.999947 |
Target: 5'- cGCCAACAAAcGUUG-C-CCAACAc-- -3' miRNA: 3'- -CGGUUGUUUaCAACcGcGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133342 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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