miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 3' -50.3 NC_004367.1 + 133816 0.71 0.921353
Target:  5'- ---gGCCAAgGAAUGUUGcCACCAACa -3'
miRNA:   3'- ggagCGGUUgUUUGCAACcGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 93366 0.71 0.915436
Target:  5'- uCCUCGCCAuACAgaGACuccaGGCgACCAGCg -3'
miRNA:   3'- -GGAGCGGU-UGU--UUGcaa-CCG-UGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133902 0.74 0.822771
Target:  5'- gUUgGCCAaaacccagugauacACAuacagagcaaaAACGUUGGCACCAGCa -3'
miRNA:   3'- gGAgCGGU--------------UGU-----------UUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133339 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133427 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133251 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133035 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 132886 0.76 0.708656
Target:  5'- ---gGCCAACAAAUGUgGGCACCAc- -3'
miRNA:   3'- ggagCGGUUGUUUGCAaCCGUGGUug -5'
17317 3' -50.3 NC_004367.1 + 106811 0.78 0.602797
Target:  5'- --cCGCCAuCAAACGUUGGCGgCGGCc -3'
miRNA:   3'- ggaGCGGUuGUUUGCAACCGUgGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133160 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133328 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133552 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133571 0.81 0.469412
Target:  5'- cUCUCGgCAACGuuUGUUGGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133072 0.82 0.422113
Target:  5'- uCCUCGUCAACAAAUGgUGGUGCCcACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCaACCGUGGuUG- -5'
17317 3' -50.3 NC_004367.1 + 133114 0.86 0.25815
Target:  5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133074 0.86 0.25815
Target:  5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133376 0.89 0.162514
Target:  5'- uCCUCGCCAACAAACGUUG-C-CCAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACcGuGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133300 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133220 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133260 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.