miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 3' -50.3 NC_004367.1 + 92533 0.66 0.995469
Target:  5'- gCUaCGCCGGC---CGUUGGCAUUAGa -3'
miRNA:   3'- gGA-GCGGUUGuuuGCAACCGUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133378 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 137387 0.66 0.996071
Target:  5'- gCUCGguaaaacCCGGCAAcCGUUGGCGuuCCGAg -3'
miRNA:   3'- gGAGC-------GGUUGUUuGCAACCGU--GGUUg -5'
17317 3' -50.3 NC_004367.1 + 133154 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 84662 0.67 0.986176
Target:  5'- gCUCuaaGCCAACAAA---UGGCGCCGuACa -3'
miRNA:   3'- gGAG---CGGUUGUUUgcaACCGUGGU-UG- -5'
17317 3' -50.3 NC_004367.1 + 133464 0.7 0.937554
Target:  5'- uCgUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GgAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 58979 0.66 0.996133
Target:  5'- gUCUCGCCAuuggaaACAGuuuuuACGUgaUGGUAgCCGAUg -3'
miRNA:   3'- -GGAGCGGU------UGUU-----UGCA--ACCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133816 0.71 0.921353
Target:  5'- ---gGCCAAgGAAUGUUGcCACCAACa -3'
miRNA:   3'- ggagCGGUUgUUUGCAACcGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133160 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133328 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133552 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133612 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133132 0.92 0.108535
Target:  5'- ---gGCCAACAAAUGUUGGCACCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133656 1.09 0.010646
Target:  5'- uCCUCGCCAACAGACGUUGGCACUAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133760 1.13 0.005646
Target:  5'- uCCUCGCCAACAAACGUUGGCACCAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133260 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133720 0.93 0.099976
Target:  5'- -gUCaGCCAACAAAUGUUGGCACCAACa -3'
miRNA:   3'- ggAG-CGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133220 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133376 0.89 0.162514
Target:  5'- uCCUCGCCAACAAACGUUG-C-CCAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACcGuGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133072 0.82 0.422113
Target:  5'- uCCUCGUCAACAAAUGgUGGUGCCcACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCaACCGUGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.