miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 3' -50.3 NC_004367.1 + 133074 0.86 0.25815
Target:  5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133466 0.68 0.98438
Target:  5'- cUCUCGgCAACGuuUGUUaGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAAcCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133154 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 137387 0.66 0.996071
Target:  5'- gCUCGguaaaacCCGGCAAcCGUUGGCGuuCCGAg -3'
miRNA:   3'- gGAGC-------GGUUGUUuGCAACCGU--GGUUg -5'
17317 3' -50.3 NC_004367.1 + 132886 0.76 0.708656
Target:  5'- ---gGCCAACAAAUGUgGGCACCAc- -3'
miRNA:   3'- ggagCGGUUGUUUGCAaCCGUGGUug -5'
17317 3' -50.3 NC_004367.1 + 133035 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133339 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133427 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 123910 0.71 0.932413
Target:  5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3'
miRNA:   3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133529 0.69 0.972643
Target:  5'- gUCUUGgggCAACGuuUGUUGGUGCCAACa -3'
miRNA:   3'- -GGAGCg--GUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 52261 0.7 0.947068
Target:  5'- ---aGCCAGCAGAuauCGUUGaGCGCUGGCg -3'
miRNA:   3'- ggagCGGUUGUUU---GCAAC-CGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 121001 0.71 0.932413
Target:  5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3'
miRNA:   3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133114 0.86 0.25815
Target:  5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133290 0.7 0.955572
Target:  5'- cUCUCGgCAACGuuUGUUGGCGaCGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUgGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133571 0.81 0.469412
Target:  5'- cUCUCGgCAACGuuUGUUGGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 93366 0.71 0.915436
Target:  5'- uCCUCGCCAuACAgaGACuccaGGCgACCAGCg -3'
miRNA:   3'- -GGAGCGGU-UGU--UUGcaa-CCG-UGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 132947 0.69 0.969685
Target:  5'- uUUgGgCAACGuuUGUUGGUGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 132986 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 106811 0.78 0.602797
Target:  5'- --cCGCCAuCAAACGUUGGCGgCGGCc -3'
miRNA:   3'- ggaGCGGUuGUUUGCAACCGUgGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133251 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.