Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17317 | 3' | -50.3 | NC_004367.1 | + | 2931 | 0.67 | 0.991826 |
Target: 5'- uUUC-CCAAUAGA---UGGCGCCAACa -3' miRNA: 3'- gGAGcGGUUGUUUgcaACCGUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 38616 | 0.66 | 0.996715 |
Target: 5'- uCUUCGCCcauccccaugAGCGAuUGUUGGUACUGAa -3' miRNA: 3'- -GGAGCGG----------UUGUUuGCAACCGUGGUUg -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 52261 | 0.7 | 0.947068 |
Target: 5'- ---aGCCAGCAGAuauCGUUGaGCGCUGGCg -3' miRNA: 3'- ggagCGGUUGUUU---GCAAC-CGUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 58979 | 0.66 | 0.996133 |
Target: 5'- gUCUCGCCAuuggaaACAGuuuuuACGUgaUGGUAgCCGAUg -3' miRNA: 3'- -GGAGCGGU------UGUU-----UGCA--ACCGU-GGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 84662 | 0.67 | 0.986176 |
Target: 5'- gCUCuaaGCCAACAAA---UGGCGCCGuACa -3' miRNA: 3'- gGAG---CGGUUGUUUgcaACCGUGGU-UG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 92533 | 0.66 | 0.995469 |
Target: 5'- gCUaCGCCGGC---CGUUGGCAUUAGa -3' miRNA: 3'- gGA-GCGGUUGuuuGCAACCGUGGUUg -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 93366 | 0.71 | 0.915436 |
Target: 5'- uCCUCGCCAuACAgaGACuccaGGCgACCAGCg -3' miRNA: 3'- -GGAGCGGU-UGU--UUGcaa-CCG-UGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 96996 | 0.66 | 0.995469 |
Target: 5'- aCCUCGCUucACGAGCGaagcggcuggUUGG-ACUAGCu -3' miRNA: 3'- -GGAGCGGu-UGUUUGC----------AACCgUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 106811 | 0.78 | 0.602797 |
Target: 5'- --cCGCCAuCAAACGUUGGCGgCGGCc -3' miRNA: 3'- ggaGCGGUuGUUUGCAACCGUgGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 121001 | 0.71 | 0.932413 |
Target: 5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3' miRNA: 3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 122757 | 0.66 | 0.996715 |
Target: 5'- gCUCGCCGggacuuACAGccGCGaUGGCcCCAGu -3' miRNA: 3'- gGAGCGGU------UGUU--UGCaACCGuGGUUg -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 123910 | 0.71 | 0.932413 |
Target: 5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3' miRNA: 3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 126819 | 0.71 | 0.932413 |
Target: 5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3' miRNA: 3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 132886 | 0.76 | 0.708656 |
Target: 5'- ---gGCCAACAAAUGUgGGCACCAc- -3' miRNA: 3'- ggagCGGUUGUUUGCAaCCGUGGUug -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 132947 | 0.69 | 0.969685 |
Target: 5'- uUUgGgCAACGuuUGUUGGUGCCAACa -3' miRNA: 3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 132986 | 0.67 | 0.986176 |
Target: 5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3' miRNA: 3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 133035 | 0.74 | 0.807418 |
Target: 5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3' miRNA: 3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 133072 | 0.82 | 0.422113 |
Target: 5'- uCCUCGUCAACAAAUGgUGGUGCCcACa -3' miRNA: 3'- -GGAGCGGUUGUUUGCaACCGUGGuUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 133074 | 0.86 | 0.25815 |
Target: 5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3' miRNA: 3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5' |
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17317 | 3' | -50.3 | NC_004367.1 | + | 133114 | 0.86 | 0.25815 |
Target: 5'- cUCUCGgCAACGuuUGUUGGCGCCAACa -3' miRNA: 3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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