miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 3' -50.3 NC_004367.1 + 137387 0.66 0.996071
Target:  5'- gCUCGguaaaacCCGGCAAcCGUUGGCGuuCCGAg -3'
miRNA:   3'- gGAGC-------GGUUGUUuGCAACCGU--GGUUg -5'
17317 3' -50.3 NC_004367.1 + 133902 0.74 0.822771
Target:  5'- gUUgGCCAaaacccagugauacACAuacagagcaaaAACGUUGGCACCAGCa -3'
miRNA:   3'- gGAgCGGU--------------UGU-----------UUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133816 0.71 0.921353
Target:  5'- ---gGCCAAgGAAUGUUGcCACCAACa -3'
miRNA:   3'- ggagCGGUUgUUUGCAACcGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133760 1.13 0.005646
Target:  5'- uCCUCGCCAACAAACGUUGGCACCAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133720 0.93 0.099976
Target:  5'- -gUCaGCCAACAAAUGUUGGCACCAACa -3'
miRNA:   3'- ggAG-CGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133656 1.09 0.010646
Target:  5'- uCCUCGCCAACAGACGUUGGCACUAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133612 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133571 0.81 0.469412
Target:  5'- cUCUCGgCAACGuuUGUUGGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133552 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133529 0.69 0.972643
Target:  5'- gUCUUGgggCAACGuuUGUUGGUGCCAACa -3'
miRNA:   3'- -GGAGCg--GUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133524 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133466 0.68 0.98438
Target:  5'- cUCUCGgCAACGuuUGUUaGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAAcCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133464 0.7 0.937554
Target:  5'- uCgUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GgAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133436 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133427 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133378 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 133376 0.89 0.162514
Target:  5'- uCCUCGCCAACAAACGUUG-C-CCAACa -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAACcGuGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133339 0.74 0.807418
Target:  5'- gUUgGgCAACGuuUGUUGGCGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133328 0.79 0.539808
Target:  5'- uCCUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GGAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 133300 0.92 0.121018
Target:  5'- ---gGCCAACAAAUGUUGGCGCCAACa -3'
miRNA:   3'- ggagCGGUUGUUUGCAACCGUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.