Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133426 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133250 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133034 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 132881 | 0.85 | 0.269244 |
Target: 5'- aAGgCGGCCAACAAAUGUgGGCACCAc -3' miRNA: 3'- cUCaGUCGGUUGUUUACAaCCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 94236 | 0.71 | 0.904045 |
Target: 5'- gGAGUCGcCCGGCAAguAUGUUGGCuuCAg -3' miRNA: 3'- -CUCAGUcGGUUGUU--UACAACCGugGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133526 | 0.72 | 0.882916 |
Target: 5'- uGGGUCuugGGgCAACGuuUGUUGGUGCCAa -3' miRNA: 3'- -CUCAG---UCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 126824 | 0.66 | 0.996019 |
Target: 5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3' miRNA: 3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 123915 | 0.66 | 0.996019 |
Target: 5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3' miRNA: 3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 100137 | 0.67 | 0.991491 |
Target: 5'- aGAGUCAGCgAACAAAcuacuaccagacuacGUuugaugaUGGCACCu -3' miRNA: 3'- -CUCAGUCGgUUGUUUa--------------CA-------ACCGUGGu -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 131757 | 0.67 | 0.988811 |
Target: 5'- -cGUUGGUCAACAAcUGUUGGUAaacgcCCAa -3' miRNA: 3'- cuCAGUCGGUUGUUuACAACCGU-----GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 132942 | 0.71 | 0.928513 |
Target: 5'- uGGGUUuuGGgCAACGuuUGUUGGUGCCAa -3' miRNA: 3'- -CUCAG--UCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133064 | 0.73 | 0.842765 |
Target: 5'- -uGUUGGCCGccucucggcaACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCGGU----------UGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133573 | 0.67 | 0.991491 |
Target: 5'- --cUCGG-CAACGuuUGUUGGUGCCAa -3' miRNA: 3'- cucAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133104 | 0.73 | 0.842765 |
Target: 5'- -uGUUGGCCGccucucggcaACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCGGU----------UGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 52259 | 0.69 | 0.964652 |
Target: 5'- ---aCAGCCAGCAGAUaucGUUGaGCGCUg -3' miRNA: 3'- cucaGUCGGUUGUUUA---CAAC-CGUGGu -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 121006 | 0.66 | 0.996019 |
Target: 5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3' miRNA: 3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133739 | 0.73 | 0.842765 |
Target: 5'- uGGGUUuuGGCCAACGuuUGUUGGUGCUu -3' miRNA: 3'- -CUCAG--UCGGUUGUuuACAACCGUGGu -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133338 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133618 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133530 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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