Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 39032 | 0.67 | 0.988811 |
Target: 5'- cAGUCuuuGGCgGACAuacUGUUGuGCACCAc -3' miRNA: 3'- cUCAG---UCGgUUGUuu-ACAAC-CGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133723 | 1.1 | 0.008218 |
Target: 5'- aGAGUCAGCCAACAAAUGUUGGCACCAa -3' miRNA: 3'- -CUCAGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133138 | 0.98 | 0.043559 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCACCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133618 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133530 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133442 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133306 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133266 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133226 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133777 | 0.86 | 0.227444 |
Target: 5'- cGAGUCAgucucauguguccucGCCAACAAAcGUUGGCACCAa -3' miRNA: 3'- -CUCAGU---------------CGGUUGUUUaCAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 84657 | 0.67 | 0.987246 |
Target: 5'- ----aAGCCAACAAA---UGGCGCCGu -3' miRNA: 3'- cucagUCGGUUGUUUacaACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 3122 | 0.68 | 0.97677 |
Target: 5'- cGAGgCAGagcaaAGCGGguAUGUUGGCGCCAu -3' miRNA: 3'- -CUCaGUCgg---UUGUU--UACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133864 | 0.69 | 0.971166 |
Target: 5'- -cGUUGGCacCAGCAAAUGUUGGUcuCCAg -3' miRNA: 3'- cuCAGUCG--GUUGUUUACAACCGu-GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133076 | 0.71 | 0.9228 |
Target: 5'- aGGGUCcucGUCAACAAAUGgUGGUGCCc -3' miRNA: 3'- -CUCAGu--CGGUUGUUUACaACCGUGGu -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 69729 | 0.72 | 0.897262 |
Target: 5'- gGGGUCAGCCGGcCAAGUGccaUGGCaaguauacgACCAc -3' miRNA: 3'- -CUCAGUCGGUU-GUUUACa--ACCG---------UGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133820 | 0.72 | 0.867566 |
Target: 5'- aAG-CGGCCAAgGAAUGUUGcCACCAa -3' miRNA: 3'- cUCaGUCGGUUgUUUACAACcGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133660 | 0.82 | 0.395588 |
Target: 5'- aGGGUCcucGCCAACAGAcGUUGGCACUAa -3' miRNA: 3'- -CUCAGu--CGGUUGUUUaCAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 126824 | 0.66 | 0.996019 |
Target: 5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3' miRNA: 3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133034 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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17317 | 5' | -49.8 | NC_004367.1 | + | 133250 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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