miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17347 3' -48.8 NC_004367.1 + 133811 0.66 0.999327
Target:  5'- aGGAAUGUUgCCACCaacaaacguuGCCC-AAAACc- -3'
miRNA:   3'- -CCUUACAAaGGUGG----------CGGGcUUUUGca -5'
17347 3' -48.8 NC_004367.1 + 126914 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 124005 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 121096 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 129823 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 129792 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 126883 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 123974 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 121065 0.66 0.998984
Target:  5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3'
miRNA:   3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5'
17347 3' -48.8 NC_004367.1 + 103193 0.69 0.989846
Target:  5'- cGGAUGa--CCACCGCCCuGgcAGCGg -3'
miRNA:   3'- cCUUACaaaGGUGGCGGG-CuuUUGCa -5'
17347 3' -48.8 NC_004367.1 + 4570 0.69 0.988421
Target:  5'- -------gUCCAgCGCCCGAAGACa- -3'
miRNA:   3'- ccuuacaaAGGUgGCGGGCUUUUGca -5'
17347 3' -48.8 NC_004367.1 + 147716 0.73 0.934248
Target:  5'- gGGcGUGgccUCCACCGCCgagGAAGGCGUc -3'
miRNA:   3'- -CCuUACaa-AGGUGGCGGg--CUUUUGCA- -5'
17347 3' -48.8 NC_004367.1 + 9539 1.11 0.011538
Target:  5'- uGGAAUGUUUCCACCGCCCGAAAACGUg -3'
miRNA:   3'- -CCUUACAAAGGUGGCGGGCUUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.