Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17352 | 3' | -42.5 | NC_004367.1 | + | 9035 | 0.69 | 0.999997 |
Target: 5'- aAUCGCGgaccaGCGAAAUgaacuGUACACGCg -3' miRNA: 3'- gUAGUGUa----UGUUUUAaac--CGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 10282 | 0.69 | 0.999997 |
Target: 5'- cCGUCACAguaUACAAcGggUGGUAUGCGg -3' miRNA: 3'- -GUAGUGU---AUGUUuUaaACCGUGUGCg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 11401 | 0.66 | 1 |
Target: 5'- -uUCACAgAUAAaccguaugcucgggGAUUUGGCcaGCGCGUg -3' miRNA: 3'- guAGUGUaUGUU--------------UUAAACCG--UGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 14016 | 0.73 | 0.999332 |
Target: 5'- ---gAUAUGCGuauUUUGGUGCACGCg -3' miRNA: 3'- guagUGUAUGUuuuAAACCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 14042 | 0.68 | 0.999999 |
Target: 5'- gUAUUGCAUACAGGAUUcaGUACugGUu -3' miRNA: 3'- -GUAGUGUAUGUUUUAAacCGUGugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 17785 | 1.16 | 0.023974 |
Target: 5'- aCAUCACAUACAAAAUUUGGCACACGCg -3' miRNA: 3'- -GUAGUGUAUGUUUUAAACCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 17998 | 0.77 | 0.988467 |
Target: 5'- aCAUCACAuUGCAGAuuaUGcGCAUGCGCg -3' miRNA: 3'- -GUAGUGU-AUGUUUuaaAC-CGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 18513 | 0.69 | 0.999991 |
Target: 5'- cCAUCACuUACAGAAUgcGGCGa--GCu -3' miRNA: 3'- -GUAGUGuAUGUUUUAaaCCGUgugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 26076 | 0.77 | 0.986793 |
Target: 5'- aAUCACGUaguauggaugACAAGAg--GGUACGCGCu -3' miRNA: 3'- gUAGUGUA----------UGUUUUaaaCCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 31056 | 0.66 | 1 |
Target: 5'- uCAUCAgAUGCAAuacaUGGUGCAC-Ca -3' miRNA: 3'- -GUAGUgUAUGUUuuaaACCGUGUGcG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 33200 | 0.67 | 1 |
Target: 5'- uCAUgACGUA--AGAUUUGGUAacaGCGCc -3' miRNA: 3'- -GUAgUGUAUguUUUAAACCGUg--UGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 34901 | 0.71 | 0.999952 |
Target: 5'- uCAUCAgGUGCAGAGUUcacaacuaUGGCucguuucCugGCg -3' miRNA: 3'- -GUAGUgUAUGUUUUAA--------ACCGu------GugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 41196 | 0.66 | 1 |
Target: 5'- ---uGCAUACAAAA-UUGGCACccauauCGUu -3' miRNA: 3'- guagUGUAUGUUUUaAACCGUGu-----GCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 46845 | 0.77 | 0.986793 |
Target: 5'- cCAUCACAUACAugauAGGUUUGGCAucccuCACa- -3' miRNA: 3'- -GUAGUGUAUGU----UUUAAACCGU-----GUGcg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 51949 | 0.67 | 1 |
Target: 5'- --cCACGUGCGAcaGAUUUGGagaagauCACGUu -3' miRNA: 3'- guaGUGUAUGUU--UUAAACCgu-----GUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 62500 | 0.8 | 0.944331 |
Target: 5'- ---gACAUACAGAGUUcuacgcaUGGCugGCGCa -3' miRNA: 3'- guagUGUAUGUUUUAA-------ACCGugUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 70822 | 0.67 | 1 |
Target: 5'- aCAUCGuCAUGaAAAAUUgaGGCGC-CGCa -3' miRNA: 3'- -GUAGU-GUAUgUUUUAAa-CCGUGuGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 72020 | 0.68 | 1 |
Target: 5'- --cCAgGUGCAGGGUUcaugagauggGGCugACGCu -3' miRNA: 3'- guaGUgUAUGUUUUAAa---------CCGugUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 75189 | 0.66 | 1 |
Target: 5'- uCAUUACAUGCAuuaaugugugugGGGUaagUGGgGCAUGUg -3' miRNA: 3'- -GUAGUGUAUGU------------UUUAa--ACCgUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 78895 | 0.75 | 0.997236 |
Target: 5'- gGUCGCuaaaaauguUGCAAAAUggucUGGCACGCGg -3' miRNA: 3'- gUAGUGu--------AUGUUUUAa---ACCGUGUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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