miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17352 3' -42.5 NC_004367.1 + 98842 0.72 0.999803
Target:  5'- aAUCAaAUcCAAAGUUUGGCcgAUACGCg -3'
miRNA:   3'- gUAGUgUAuGUUUUAAACCG--UGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 26076 0.77 0.986793
Target:  5'- aAUCACGUaguauggaugACAAGAg--GGUACGCGCu -3'
miRNA:   3'- gUAGUGUA----------UGUUUUaaaCCGUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 62500 0.8 0.944331
Target:  5'- ---gACAUACAGAGUUcuacgcaUGGCugGCGCa -3'
miRNA:   3'- guagUGUAUGUUUUAA-------ACCGugUGCG- -5'
17352 3' -42.5 NC_004367.1 + 17785 1.16 0.023974
Target:  5'- aCAUCACAUACAAAAUUUGGCACACGCg -3'
miRNA:   3'- -GUAGUGUAUGUUUUAAACCGUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 14042 0.68 0.999999
Target:  5'- gUAUUGCAUACAGGAUUcaGUACugGUu -3'
miRNA:   3'- -GUAGUGUAUGUUUUAAacCGUGugCG- -5'
17352 3' -42.5 NC_004367.1 + 9035 0.69 0.999997
Target:  5'- aAUCGCGgaccaGCGAAAUgaacuGUACACGCg -3'
miRNA:   3'- gUAGUGUa----UGUUUUAaac--CGUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 11401 0.66 1
Target:  5'- -uUCACAgAUAAaccguaugcucgggGAUUUGGCcaGCGCGUg -3'
miRNA:   3'- guAGUGUaUGUU--------------UUAAACCG--UGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 75189 0.66 1
Target:  5'- uCAUUACAUGCAuuaaugugugugGGGUaagUGGgGCAUGUg -3'
miRNA:   3'- -GUAGUGUAUGU------------UUUAa--ACCgUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 84715 0.67 1
Target:  5'- gGUCACAUcaugcGCGGAAcuuagccagaucUUUGGCACAUc- -3'
miRNA:   3'- gUAGUGUA-----UGUUUU------------AAACCGUGUGcg -5'
17352 3' -42.5 NC_004367.1 + 72020 0.68 1
Target:  5'- --cCAgGUGCAGGGUUcaugagauggGGCugACGCu -3'
miRNA:   3'- guaGUgUAUGUUUUAAa---------CCGugUGCG- -5'
17352 3' -42.5 NC_004367.1 + 96698 0.7 0.999965
Target:  5'- cUAUCAUcUGCAccccaaGGCGCACGCc -3'
miRNA:   3'- -GUAGUGuAUGUuuuaaaCCGUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 41196 0.66 1
Target:  5'- ---uGCAUACAAAA-UUGGCACccauauCGUu -3'
miRNA:   3'- guagUGUAUGUUUUaAACCGUGu-----GCG- -5'
17352 3' -42.5 NC_004367.1 + 18513 0.69 0.999991
Target:  5'- cCAUCACuUACAGAAUgcGGCGa--GCu -3'
miRNA:   3'- -GUAGUGuAUGUUUUAaaCCGUgugCG- -5'
17352 3' -42.5 NC_004367.1 + 51949 0.67 1
Target:  5'- --cCACGUGCGAcaGAUUUGGagaagauCACGUu -3'
miRNA:   3'- guaGUGUAUGUU--UUAAACCgu-----GUGCG- -5'
17352 3' -42.5 NC_004367.1 + 81145 0.66 1
Target:  5'- -------aACGGAG--UGGCACACGCc -3'
miRNA:   3'- guaguguaUGUUUUaaACCGUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 10282 0.69 0.999997
Target:  5'- cCGUCACAguaUACAAcGggUGGUAUGCGg -3'
miRNA:   3'- -GUAGUGU---AUGUUuUaaACCGUGUGCg -5'
17352 3' -42.5 NC_004367.1 + 78895 0.75 0.997236
Target:  5'- gGUCGCuaaaaauguUGCAAAAUggucUGGCACGCGg -3'
miRNA:   3'- gUAGUGu--------AUGUUUUAa---ACCGUGUGCg -5'
17352 3' -42.5 NC_004367.1 + 79544 0.76 0.993583
Target:  5'- uGUCACAUugAGuuUUgGGuCACACGCc -3'
miRNA:   3'- gUAGUGUAugUUuuAAaCC-GUGUGCG- -5'
17352 3' -42.5 NC_004367.1 + 80646 0.75 0.997236
Target:  5'- uCAUC-CGUGCGAuggaucacaAGUUUGGCAUcCGCa -3'
miRNA:   3'- -GUAGuGUAUGUU---------UUAAACCGUGuGCG- -5'
17352 3' -42.5 NC_004367.1 + 14016 0.73 0.999332
Target:  5'- ---gAUAUGCGuauUUUGGUGCACGCg -3'
miRNA:   3'- guagUGUAUGUuuuAAACCGUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.