miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17358 3' -49.3 NC_004367.1 + 141559 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 141231 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 123791 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 4616 0.67 0.996031
Target:  5'- aUGCGGUUAUCUgUAcuuUUACCCACUa -3'
miRNA:   3'- -ACGUUAAUGGAgGUccuAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 145491 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 143197 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 140576 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 96309 0.68 0.988946
Target:  5'- aUGUuAUUGCUUCCcuuccGAUaGCCCGCCg -3'
miRNA:   3'- -ACGuUAAUGGAGGuc---CUAaUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 142869 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 135606 0.68 0.987413
Target:  5'- uUGCAGUU-CCUUCAGGGcgcGCUCAgCg -3'
miRNA:   3'- -ACGUUAAuGGAGGUCCUaa-UGGGUgG- -5'
17358 3' -49.3 NC_004367.1 + 140903 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 141886 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 129610 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 126701 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 120882 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 25237 0.66 0.996632
Target:  5'- aGCAcagUACCcCCAGGccgaaaCCACCa -3'
miRNA:   3'- aCGUua-AUGGaGGUCCuaaug-GGUGG- -5'
17358 3' -49.3 NC_004367.1 + 97043 0.66 0.998276
Target:  5'- gGCAGgugagcccuCCUCCAGauaagccuCCCACCg -3'
miRNA:   3'- aCGUUaau------GGAGGUCcuaau---GGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 145818 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 144508 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 143525 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.