miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17358 3' -49.3 NC_004367.1 + 23038 1.13 0.006384
Target:  5'- aUGCAAUUACCUCCAGGAUUACCCACCu -3'
miRNA:   3'- -ACGUUAAUGGAGGUCCUAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 25237 0.66 0.996632
Target:  5'- aGCAcagUACCcCCAGGccgaaaCCACCa -3'
miRNA:   3'- aCGUua-AUGGaGGUCCuaaug-GGUGG- -5'
17358 3' -49.3 NC_004367.1 + 123791 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 97043 0.66 0.998276
Target:  5'- gGCAGgugagcccuCCUCCAGauaagccuCCCACCg -3'
miRNA:   3'- aCGUUaau------GGAGGUCcuaau---GGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 123624 0.73 0.899537
Target:  5'- gUGCAGUgGCCaCCAGGAggcgACCCuaggACCu -3'
miRNA:   3'- -ACGUUAaUGGaGGUCCUaa--UGGG----UGG- -5'
17358 3' -49.3 NC_004367.1 + 126533 0.73 0.899537
Target:  5'- gUGCAGUgGCCaCCAGGAggcgACCCuaggACCu -3'
miRNA:   3'- -ACGUUAaUGGaGGUCCUaa--UGGG----UGG- -5'
17358 3' -49.3 NC_004367.1 + 86502 0.72 0.930059
Target:  5'- uUGCAccacACCUCCGGGGUaa-CCACUg -3'
miRNA:   3'- -ACGUuaa-UGGAGGUCCUAaugGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 91169 0.71 0.940422
Target:  5'- aGCGGUgGCCUCCAGGAaaucucuaaUGCCCu-- -3'
miRNA:   3'- aCGUUAaUGGAGGUCCUa--------AUGGGugg -5'
17358 3' -49.3 NC_004367.1 + 115797 0.7 0.968625
Target:  5'- cUGUAGUaccaaUACCUaCCgguAGGggUACCUACCg -3'
miRNA:   3'- -ACGUUA-----AUGGA-GG---UCCuaAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 4616 0.67 0.996031
Target:  5'- aUGCGGUUAUCUgUAcuuUUACCCACUa -3'
miRNA:   3'- -ACGUUAAUGGAgGUccuAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 41380 0.69 0.981817
Target:  5'- cGCAGUUACCUUUgAGG----UCCACCa -3'
miRNA:   3'- aCGUUAAUGGAGG-UCCuaauGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 22741 0.7 0.968625
Target:  5'- cUGUAGUaccaaUACCUaCCgguAGGggUACCUACCg -3'
miRNA:   3'- -ACGUUA-----AUGGA-GG---UCCuaAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 56400 1.13 0.006384
Target:  5'- aUGCAAUUACCUCCAGGAUUACCCACCu -3'
miRNA:   3'- -ACGUUAAUGGAGGUCCUAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 135606 0.68 0.987413
Target:  5'- uUGCAGUU-CCUUCAGGGcgcGCUCAgCg -3'
miRNA:   3'- -ACGUUAAuGGAGGUCCUaa-UGGGUgG- -5'
17358 3' -49.3 NC_004367.1 + 116095 1.13 0.006384
Target:  5'- aUGCAAUUACCUCCAGGAUUACCCACCu -3'
miRNA:   3'- -ACGUUAAUGGAGGUCCUAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 68579 0.7 0.965331
Target:  5'- gGUAAUUACCaCCuGGuucUUGCCCugCu -3'
miRNA:   3'- aCGUUAAUGGaGGuCCu--AAUGGGugG- -5'
17358 3' -49.3 NC_004367.1 + 96309 0.68 0.988946
Target:  5'- aUGUuAUUGCUUCCcuuccGAUaGCCCGCCg -3'
miRNA:   3'- -ACGuUAAUGGAGGuc---CUAaUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 120882 0.66 0.996955
Target:  5'- gGCGGgccGCCUCCGGGccaggggcuggACCC-CCu -3'
miRNA:   3'- aCGUUaa-UGGAGGUCCuaa--------UGGGuGG- -5'
17358 3' -49.3 NC_004367.1 + 120715 0.73 0.899537
Target:  5'- gUGCAGUgGCCaCCAGGAggcgACCCuaggACCu -3'
miRNA:   3'- -ACGUUAaUGGaGGUCCUaa--UGGG----UGG- -5'
17358 3' -49.3 NC_004367.1 + 129442 0.73 0.899537
Target:  5'- gUGCAGUgGCCaCCAGGAggcgACCCuaggACCu -3'
miRNA:   3'- -ACGUUAaUGGaGGUCCUaa--UGGG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.