Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17358 | 3' | -49.3 | NC_004367.1 | + | 1450 | 0.69 | 0.97959 |
Target: 5'- cUGCAAcaugACU--CAGGGUgGCCCACCa -3' miRNA: 3'- -ACGUUaa--UGGagGUCCUAaUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 4616 | 0.67 | 0.996031 |
Target: 5'- aUGCGGUUAUCUgUAcuuUUACCCACUa -3' miRNA: 3'- -ACGUUAAUGGAgGUccuAAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 22741 | 0.7 | 0.968625 |
Target: 5'- cUGUAGUaccaaUACCUaCCgguAGGggUACCUACCg -3' miRNA: 3'- -ACGUUA-----AUGGA-GG---UCCuaAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 23038 | 1.13 | 0.006384 |
Target: 5'- aUGCAAUUACCUCCAGGAUUACCCACCu -3' miRNA: 3'- -ACGUUAAUGGAGGUCCUAAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 25237 | 0.66 | 0.996632 |
Target: 5'- aGCAcagUACCcCCAGGccgaaaCCACCa -3' miRNA: 3'- aCGUua-AUGGaGGUCCuaaug-GGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 26625 | 0.71 | 0.954009 |
Target: 5'- aUGUg---ACC-CCAGGGUU-CCCACCc -3' miRNA: 3'- -ACGuuaaUGGaGGUCCUAAuGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 30002 | 0.68 | 0.987413 |
Target: 5'- uUGCGuguccACC-CCGGGGcgAUCCGCCg -3' miRNA: 3'- -ACGUuaa--UGGaGGUCCUaaUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 39009 | 0.67 | 0.993683 |
Target: 5'- gUGCAcc-ACCUcCCAGGua-AUCCGCCc -3' miRNA: 3'- -ACGUuaaUGGA-GGUCCuaaUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 41380 | 0.69 | 0.981817 |
Target: 5'- cGCAGUUACCUUUgAGG----UCCACCa -3' miRNA: 3'- aCGUUAAUGGAGG-UCCuaauGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 44527 | 0.7 | 0.958028 |
Target: 5'- cUGUcacuUUACCUCCAGGAgaa-UCGCCu -3' miRNA: 3'- -ACGuu--AAUGGAGGUCCUaaugGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 47012 | 0.66 | 0.99834 |
Target: 5'- aGCAGUaauguuugUAUCUCCucAGGAU--CCCACg -3' miRNA: 3'- aCGUUA--------AUGGAGG--UCCUAauGGGUGg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 50640 | 0.67 | 0.992689 |
Target: 5'- aGCGGUUGCUcgaaaaUCCAGGccaGCCUgACCa -3' miRNA: 3'- aCGUUAAUGG------AGGUCCuaaUGGG-UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 56400 | 1.13 | 0.006384 |
Target: 5'- aUGCAAUUACCUCCAGGAUUACCCACCu -3' miRNA: 3'- -ACGUUAAUGGAGGUCCUAAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 63730 | 0.66 | 0.996851 |
Target: 5'- gGUGAgacUACCUCaCAGGGccuuaaacgcaaagUAUCCACCa -3' miRNA: 3'- aCGUUa--AUGGAG-GUCCUa-------------AUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 68579 | 0.7 | 0.965331 |
Target: 5'- gGUAAUUACCaCCuGGuucUUGCCCugCu -3' miRNA: 3'- aCGUUAAUGGaGGuCCu--AAUGGGugG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 86502 | 0.72 | 0.930059 |
Target: 5'- uUGCAccacACCUCCGGGGUaa-CCACUg -3' miRNA: 3'- -ACGUuaa-UGGAGGUCCUAaugGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 91169 | 0.71 | 0.940422 |
Target: 5'- aGCGGUgGCCUCCAGGAaaucucuaaUGCCCu-- -3' miRNA: 3'- aCGUUAaUGGAGGUCCUa--------AUGGGugg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 91288 | 0.67 | 0.996031 |
Target: 5'- aGCGAUUuaugacacaagGCCUCCAcccGAUUGUCCACUc -3' miRNA: 3'- aCGUUAA-----------UGGAGGUc--CUAAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 96309 | 0.68 | 0.988946 |
Target: 5'- aUGUuAUUGCUUCCcuuccGAUaGCCCGCCg -3' miRNA: 3'- -ACGuUAAUGGAGGuc---CUAaUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 97043 | 0.66 | 0.998276 |
Target: 5'- gGCAGgugagcccuCCUCCAGauaagccuCCCACCg -3' miRNA: 3'- aCGUUaau------GGAGGUCcuaau---GGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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