miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17360 5' -53.5 NC_004367.1 + 147463 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 147135 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 146807 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 146152 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 142548 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 142875 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 143203 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 143531 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 143858 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 144186 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 144514 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 144841 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 145169 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 145497 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 145824 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 146480 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 100023 0.72 0.748803
Target:  5'- aGGAGGGguGGGC-UGGGGAGGaguaGGAg -3'
miRNA:   3'- gCCUCCCuuUUUGuACCCUUCCc---CCU- -5'
17360 5' -53.5 NC_004367.1 + 140582 0.75 0.581724
Target:  5'- cCGGGGGGGcuugggguagguuuuGGgGUGGGggGGGGGu -3'
miRNA:   3'- -GCCUCCCUuu-------------UUgUACCCuuCCCCCu -5'
17360 5' -53.5 NC_004367.1 + 117669 0.75 0.554068
Target:  5'- ---uGGGuaugauGACAUGGGggGGGGGGg -3'
miRNA:   3'- gccuCCCuuu---UUGUACCCuuCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 22635 0.77 0.455994
Target:  5'- gGGAuGGGGugaccuACAuuUGGGAAGGGGGGg -3'
miRNA:   3'- gCCU-CCCUuuu---UGU--ACCCUUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.