miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17362 3' -54.5 NC_004367.1 + 148307 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 145686 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 146013 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 146341 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 146669 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 146996 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 147324 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 147652 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 147979 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 145358 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 145030 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 144375 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141098 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141426 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141753 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 142081 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 142409 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 143064 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 143392 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 144047 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.