Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17362 | 3' | -54.5 | NC_004367.1 | + | 148307 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 145686 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 146013 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 146341 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 146669 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 146996 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 147324 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 147652 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 147979 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 145358 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 145030 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 144375 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 141098 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 141426 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 141753 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 142081 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 142409 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 143064 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 143392 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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17362 | 3' | -54.5 | NC_004367.1 | + | 144047 | 0.66 | 0.942981 |
Target: 5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3' miRNA: 3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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