Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17363 | 3' | -54.7 | NC_004367.1 | + | 24826 | 0.7 | 0.768841 |
Target: 5'- uCAGAUGGUCCCccccuGAUuguGUCaaACGGCACg -3' miRNA: 3'- -GUCUACCAGGG-----CUAu--CGG--UGUCGUGg -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 29302 | 0.67 | 0.899483 |
Target: 5'- -cGGUGGUCuCUGAUA-CCACAGC-Ca -3' miRNA: 3'- guCUACCAG-GGCUAUcGGUGUCGuGg -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 35349 | 0.67 | 0.917895 |
Target: 5'- gCGGAUGGUCCUcuuuGUguUGGCACCc -3' miRNA: 3'- -GUCUACCAGGGcuauCGguGUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 53516 | 0.8 | 0.287593 |
Target: 5'- uCAGAUGGUCCUGugacagGGCCAC-GCACUu -3' miRNA: 3'- -GUCUACCAGGGCua----UCGGUGuCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 60815 | 0.67 | 0.917895 |
Target: 5'- aAGAUGGUCUUacuGUAGCCAaAGCuuCCa -3' miRNA: 3'- gUCUACCAGGGc--UAUCGGUgUCGu-GG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 69867 | 0.71 | 0.739746 |
Target: 5'- ----cGGUCCCcc-AGCCACAGC-CCa -3' miRNA: 3'- gucuaCCAGGGcuaUCGGUGUCGuGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 70648 | 0.66 | 0.93904 |
Target: 5'- -uGGUGGUgCCUauGAUGGCCACAaUACUu -3' miRNA: 3'- guCUACCA-GGG--CUAUCGGUGUcGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 74673 | 1.11 | 0.002834 |
Target: 5'- gCAGAUGGUCCCGAUAGCCACAGCACCc -3' miRNA: 3'- -GUCUACCAGGGCUAUCGGUGUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 103462 | 0.66 | 0.943717 |
Target: 5'- uGGAucUGGaccagCCUGGUggguggauuuAGCCACGGCAgCCa -3' miRNA: 3'- gUCU--ACCa----GGGCUA----------UCGGUGUCGU-GG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116493 | 0.71 | 0.729842 |
Target: 5'- gCGGuAUGGgCCgGGaGGCCugGGCACCc -3' miRNA: 3'- -GUC-UACCaGGgCUaUCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116520 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116547 | 0.66 | 0.943717 |
Target: 5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3' miRNA: 3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116571 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116597 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116623 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116649 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116676 | 0.66 | 0.943717 |
Target: 5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3' miRNA: 3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116701 | 0.66 | 0.943717 |
Target: 5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3' miRNA: 3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116751 | 0.7 | 0.796816 |
Target: 5'- cCGGAaaa-CCCGggAGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCuaUCGGugUCGUGG- -5' |
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17363 | 3' | -54.7 | NC_004367.1 | + | 116776 | 0.66 | 0.943717 |
Target: 5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3' miRNA: 3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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