miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17363 3' -54.7 NC_004367.1 + 116676 0.66 0.943717
Target:  5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 35349 0.67 0.917895
Target:  5'- gCGGAUGGUCCUcuuuGUguUGGCACCc -3'
miRNA:   3'- -GUCUACCAGGGcuauCGguGUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 60815 0.67 0.917895
Target:  5'- aAGAUGGUCUUacuGUAGCCAaAGCuuCCa -3'
miRNA:   3'- gUCUACCAGGGc--UAUCGGUgUCGu-GG- -5'
17363 3' -54.7 NC_004367.1 + 103462 0.66 0.943717
Target:  5'- uGGAucUGGaccagCCUGGUggguggauuuAGCCACGGCAgCCa -3'
miRNA:   3'- gUCU--ACCa----GGGCUA----------UCGGUGUCGU-GG- -5'
17363 3' -54.7 NC_004367.1 + 116520 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116547 0.66 0.943717
Target:  5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116571 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116597 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116623 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 29302 0.67 0.899483
Target:  5'- -cGGUGGUCuCUGAUA-CCACAGC-Ca -3'
miRNA:   3'- guCUACCAG-GGCUAUcGGUGUCGuGg -5'
17363 3' -54.7 NC_004367.1 + 116751 0.7 0.796816
Target:  5'- cCGGAaaa-CCCGggAGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCuaUCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 24826 0.7 0.768841
Target:  5'- uCAGAUGGUCCCccccuGAUuguGUCaaACGGCACg -3'
miRNA:   3'- -GUCUACCAGGG-----CUAu--CGG--UGUCGUGg -5'
17363 3' -54.7 NC_004367.1 + 116701 0.66 0.943717
Target:  5'- ----cGGaaaCCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- gucuaCCa--GGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116828 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116776 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116802 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116854 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 117114 0.66 0.943717
Target:  5'- cCGGAaaa-CCCGGgaGGCCugGGCACCc -3'
miRNA:   3'- -GUCUaccaGGGCUa-UCGGugUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 74673 1.11 0.002834
Target:  5'- gCAGAUGGUCCCGAUAGCCACAGCACCc -3'
miRNA:   3'- -GUCUACCAGGGCUAUCGGUGUCGUGG- -5'
17363 3' -54.7 NC_004367.1 + 116493 0.71 0.729842
Target:  5'- gCGGuAUGGgCCgGGaGGCCugGGCACCc -3'
miRNA:   3'- -GUC-UACCaGGgCUaUCGGugUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.