miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 3' -48.5 NC_004367.1 + 70551 0.66 0.999358
Target:  5'- aCCUCgGGugccACCACGGGggucAGUc-- -3'
miRNA:   3'- -GGAGgCCuuu-UGGUGCCCaa--UCAaaa -5'
17364 3' -48.5 NC_004367.1 + 124180 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 127089 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 129998 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 121271 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 120890 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 129618 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 123799 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 126709 0.67 0.997014
Target:  5'- gCCUCCGG---GCCAgGGGcUGGa--- -3'
miRNA:   3'- -GGAGGCCuuuUGGUgCCCaAUCaaaa -5'
17364 3' -48.5 NC_004367.1 + 102567 0.7 0.985175
Target:  5'- gCUCCGGAGccuCCAUGGGUggcGGa--- -3'
miRNA:   3'- gGAGGCCUUuu-GGUGCCCAa--UCaaaa -5'
17364 3' -48.5 NC_004367.1 + 68170 0.7 0.985175
Target:  5'- gCUCCGGA---CCACGGGUg------ -3'
miRNA:   3'- gGAGGCCUuuuGGUGCCCAaucaaaa -5'
17364 3' -48.5 NC_004367.1 + 142224 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 142552 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 142879 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 143207 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 143535 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 141569 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 141241 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 144518 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 144845 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.