Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17366 | 5' | -56.5 | NC_004367.1 | + | 85274 | 1.08 | 0.002759 |
Target: 5'- uAGCCUCCCAGAAAACUAGCCCCGGAGu -3' miRNA: 3'- -UCGGAGGGUCUUUUGAUCGGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 21862 | 0.73 | 0.465349 |
Target: 5'- aAGCC-CgCGGGAGGCaGGCUCCGGAGc -3' miRNA: 3'- -UCGGaGgGUCUUUUGaUCGGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 29818 | 0.73 | 0.513283 |
Target: 5'- gAGCCgCCCGGcgGAUc-GCCCCGGGGu -3' miRNA: 3'- -UCGGaGGGUCuuUUGauCGGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116764 | 0.72 | 0.52016 |
Target: 5'- gAGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116663 | 0.72 | 0.522132 |
Target: 5'- aGGCCUgggcacccggaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA-------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116534 | 0.72 | 0.522132 |
Target: 5'- aGGCCUgggcacccggaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA-------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 117076 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 117024 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116972 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116920 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116868 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116816 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116713 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116585 | 0.72 | 0.530046 |
Target: 5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3' miRNA: 3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 126895 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 123986 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 121077 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 123993 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 121084 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 129804 | 0.71 | 0.603893 |
Target: 5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3' miRNA: 3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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