miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17366 5' -56.5 NC_004367.1 + 14664 0.66 0.868108
Target:  5'- cAGCUUUCUAGcAGACUGGCCa-GGAa -3'
miRNA:   3'- -UCGGAGGGUCuUUUGAUCGGggCCUc -5'
17366 5' -56.5 NC_004367.1 + 21862 0.73 0.465349
Target:  5'- aAGCC-CgCGGGAGGCaGGCUCCGGAGc -3'
miRNA:   3'- -UCGGaGgGUCUUUUGaUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 29818 0.73 0.513283
Target:  5'- gAGCCgCCCGGcgGAUc-GCCCCGGGGu -3'
miRNA:   3'- -UCGGaGGGUCuuUUGauCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 63468 0.67 0.828216
Target:  5'- uGGCgUCaCAGuc-ACUGGCCCUGGAu -3'
miRNA:   3'- -UCGgAGgGUCuuuUGAUCGGGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 64541 0.69 0.745811
Target:  5'- aGGCauguaUUCAGAAAcGCUGGCCCCGaGAGg -3'
miRNA:   3'- -UCGga---GGGUCUUU-UGAUCGGGGC-CUC- -5'
17366 5' -56.5 NC_004367.1 + 85274 1.08 0.002759
Target:  5'- uAGCCUCCCAGAAAACUAGCCCCGGAGu -3'
miRNA:   3'- -UCGGAGGGUCUUUUGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 102752 0.7 0.68594
Target:  5'- uGCCUUCCAGAuccgccacccauGGA--GGCUCCGGAGc -3'
miRNA:   3'- uCGGAGGGUCU------------UUUgaUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 116534 0.72 0.522132
Target:  5'- aGGCCUgggcacccggaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA-------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116585 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116662 0.69 0.700127
Target:  5'- aGGCCUCCCGGcccauaccgcgguccAGAACcgcccAGCuCCUGGAGc -3'
miRNA:   3'- -UCGGAGGGUC---------------UUUUGa----UCG-GGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 116663 0.72 0.522132
Target:  5'- aGGCCUgggcacccggaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA-------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116713 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116764 0.72 0.52016
Target:  5'- gAGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116790 0.66 0.889528
Target:  5'- aGGCCUCCCGGGuuuuccggguGCccAGCcuCCCGGGu -3'
miRNA:   3'- -UCGGAGGGUCUuu--------UGa-UCG--GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116816 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116868 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116920 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116972 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 117024 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 117076 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.