Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17368 | 3' | -53.4 | NC_004367.1 | + | 143291 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 142963 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 145912 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 146568 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 146240 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 115982 | 0.67 | 0.937766 |
Target: 5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3' miRNA: 3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 122278 | 0.67 | 0.950975 |
Target: 5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3' miRNA: 3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 148206 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 125187 | 0.67 | 0.950975 |
Target: 5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3' miRNA: 3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 128096 | 0.67 | 0.950975 |
Target: 5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3' miRNA: 3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 148861 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 148534 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 146895 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 22926 | 0.67 | 0.937766 |
Target: 5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3' miRNA: 3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 147878 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 147551 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 147223 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 149189 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 11059 | 0.68 | 0.897295 |
Target: 5'- aAGAaGAGCCg-UCAUCGGUGCGuauGGCc -3' miRNA: 3'- -UCUaUUCGGagGGUGGCCAUGUu--CCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 74871 | 0.68 | 0.921911 |
Target: 5'- uAGGUGgcAGCaugUCCUgaGCCGGUGCuguGGCu -3' miRNA: 3'- -UCUAU--UCGg--AGGG--UGGCCAUGuu-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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