miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17368 3' -53.4 NC_004367.1 + 116927 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116979 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117031 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117083 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117135 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117187 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117239 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117291 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 122278 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 125187 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 128096 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 140670 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 140997 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 141325 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 141653 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 141980 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142308 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142636 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142963 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 143291 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.