miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17368 3' -53.4 NC_004367.1 + 1145 0.66 0.96937
Target:  5'- ----cAGCCccacUCCCGCCGGUguuuaucgACAAauGGCu -3'
miRNA:   3'- ucuauUCGG----AGGGUGGCCA--------UGUU--CCG- -5'
17368 3' -53.4 NC_004367.1 + 11059 0.68 0.897295
Target:  5'- aAGAaGAGCCg-UCAUCGGUGCGuauGGCc -3'
miRNA:   3'- -UCUaUUCGGagGGUGGCCAUGUu--CCG- -5'
17368 3' -53.4 NC_004367.1 + 19385 0.75 0.558729
Target:  5'- gGGcgGAGCa-CCCACCGGUcGCAacAGGCa -3'
miRNA:   3'- -UCuaUUCGgaGGGUGGCCA-UGU--UCCG- -5'
17368 3' -53.4 NC_004367.1 + 22032 0.78 0.41383
Target:  5'- cGGAgccuGCCUCCCGCgGGcuucuuUGCAGGGCu -3'
miRNA:   3'- -UCUauu-CGGAGGGUGgCC------AUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 22926 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 40790 0.66 0.962863
Target:  5'- -----cGCCUCCUuccuaaccuguCCGGUACAgacccAGGCc -3'
miRNA:   3'- ucuauuCGGAGGGu----------GGCCAUGU-----UCCG- -5'
17368 3' -53.4 NC_004367.1 + 49051 0.66 0.959274
Target:  5'- -----uGCCUCCgGCCG-UGCAcAGGCc -3'
miRNA:   3'- ucuauuCGGAGGgUGGCcAUGU-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 54686 0.74 0.641902
Target:  5'- uGAUGgaAGCCUCCCAUCGGcUACAuauucaauGGUu -3'
miRNA:   3'- uCUAU--UCGGAGGGUGGCC-AUGUu-------CCG- -5'
17368 3' -53.4 NC_004367.1 + 74871 0.68 0.921911
Target:  5'- uAGGUGgcAGCaugUCCUgaGCCGGUGCuguGGCu -3'
miRNA:   3'- -UCUAU--UCGg--AGGG--UGGCCAUGuu-CCG- -5'
17368 3' -53.4 NC_004367.1 + 78302 0.66 0.967193
Target:  5'- uGAUGAGCCUCuuCCuucuacgucaucccaACCGGgGCGucaacgaAGGCa -3'
miRNA:   3'- uCUAUUCGGAG--GG---------------UGGCCaUGU-------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 92355 0.66 0.962863
Target:  5'- uGGUucGCCUCCUgcuGCuCGGUugGgagcugGGGCu -3'
miRNA:   3'- uCUAuuCGGAGGG---UG-GCCAugU------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 97061 1.13 0.002699
Target:  5'- cAGAUAAGCCUCCCACCGGUACAAGGCa -3'
miRNA:   3'- -UCUAUUCGGAGGGUGGCCAUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 97246 0.75 0.548497
Target:  5'- gGGAUcagcuGCCUUgUACCGGUGgGAGGCu -3'
miRNA:   3'- -UCUAuu---CGGAGgGUGGCCAUgUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 110176 0.68 0.897295
Target:  5'- uAGGUGAGCCUUCCGguuugaGGgaacaACAGGGUg -3'
miRNA:   3'- -UCUAUUCGGAGGGUgg----CCa----UGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 114155 0.66 0.959274
Target:  5'- cAGAUuauAGUCUUCacaaCACCGaGUGCAGcGGCa -3'
miRNA:   3'- -UCUAu--UCGGAGG----GUGGC-CAUGUU-CCG- -5'
17368 3' -53.4 NC_004367.1 + 115982 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116722 0.7 0.845152
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116773 0.7 0.845152
Target:  5'- cGGGUGcccAGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU---UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116825 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116875 0.7 0.845152
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.