Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17368 | 3' | -53.4 | NC_004367.1 | + | 97061 | 1.13 | 0.002699 |
Target: 5'- cAGAUAAGCCUCCCACCGGUACAAGGCa -3' miRNA: 3'- -UCUAUUCGGAGGGUGGCCAUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 145912 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 146568 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 40790 | 0.66 | 0.962863 |
Target: 5'- -----cGCCUCCUuccuaaccuguCCGGUACAgacccAGGCc -3' miRNA: 3'- ucuauuCGGAGGGu----------GGCCAUGU-----UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 141653 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 141980 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 142636 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 142963 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 143946 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 145585 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 144602 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 143619 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 140670 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 144929 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 140997 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 143291 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 145257 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 146240 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 141325 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 142308 | 0.67 | 0.934775 |
Target: 5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3' miRNA: 3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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